Wall clock time and date at job start Mon Mar 30 2020 00:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47142 * 2 1 4 4 C 1.50696 * 109.47320 * 120.00550 * 2 1 3 5 5 O 1.21279 * 120.00038 * 120.00152 * 4 2 1 6 6 N 1.34780 * 119.99895 * 299.99758 * 4 2 1 7 7 C 1.46496 * 119.99857 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47080 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.47080 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00146 * 269.99904 * 9 8 7 11 11 C 1.36939 * 119.99925 * 90.00403 * 9 8 7 12 12 H 1.08002 * 119.99989 * 22.34120 * 11 9 8 13 13 C 1.38818 * 120.00053 * 202.34562 * 11 9 8 14 14 N 1.31618 * 119.99959 * 11.33970 * 13 11 9 15 15 Si 1.86795 * 120.00055 * 191.34442 * 13 11 9 16 16 H 1.48499 * 109.47173 * 59.99880 * 15 13 11 17 17 H 1.48499 * 109.47457 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47130 * 299.99931 * 15 13 11 19 19 N 1.46506 * 109.47137 * 240.00493 * 2 1 3 20 20 C 1.36339 * 125.63315 * 299.69376 * 19 2 1 21 21 C 1.34857 * 108.21774 * 179.82960 * 20 19 2 22 22 C 1.40892 * 107.41297 * 0.42197 * 21 20 19 23 23 C 1.34854 * 107.42015 * 359.73921 * 22 21 20 24 24 H 1.09000 * 109.46836 * 59.99616 * 1 2 3 25 25 H 1.08998 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46912 * 299.99244 * 1 2 3 27 27 H 0.96998 * 120.00162 * 0.02562 * 6 4 2 28 28 H 1.08998 * 109.47690 * 300.00196 * 7 6 4 29 29 H 1.09001 * 109.47050 * 60.00276 * 7 6 4 30 30 H 1.08995 * 109.47234 * 300.00119 * 8 7 6 31 31 H 1.08996 * 109.46564 * 60.00348 * 8 7 6 32 32 H 1.09004 * 109.47042 * 94.21407 * 10 9 8 33 33 H 1.09005 * 109.47101 * 214.21073 * 10 9 8 34 34 H 1.08995 * 109.47592 * 334.21571 * 10 9 8 35 35 H 0.96994 * 120.00206 * 180.02562 * 14 13 11 36 36 H 1.07995 * 125.89582 * 359.95944 * 20 19 2 37 37 H 1.07998 * 126.29396 * 180.15963 * 21 20 19 38 38 H 1.08004 * 126.28701 * 179.73295 * 22 21 20 39 39 H 1.07997 * 125.89101 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6506 8 6 1.6844 -0.2202 4.8999 9 7 2.1718 -0.9116 6.0960 10 6 1.3793 -1.9894 6.6932 11 6 3.3681 -0.5504 6.6559 12 1 3.7763 0.4322 6.4706 13 6 4.0564 -1.4473 7.4615 14 7 3.6831 -2.7085 7.5104 15 14 5.5121 -0.8641 8.4764 16 1 5.0671 0.1949 9.4174 17 1 6.0691 -2.0062 9.2449 18 1 6.5573 -0.3173 7.5741 19 7 2.0184 -0.6905 -1.1963 20 6 1.7656 -1.9901 -1.5221 21 6 2.3799 -2.2585 -2.6922 22 6 3.0440 -1.0843 -3.0989 23 6 2.8055 -0.1415 -2.1647 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.1489 0.5383 2.5436 28 1 1.8311 -1.9686 3.6504 29 1 3.2848 -0.9415 3.6507 30 1 2.0477 0.8074 4.9004 31 1 0.5944 -0.2203 4.8995 32 1 1.7185 -2.9489 6.3029 33 1 1.5023 -1.9737 7.7761 34 1 0.3275 -1.8475 6.4449 35 1 4.1637 -3.3350 8.0736 36 1 1.1737 -2.6842 -0.9441 37 1 2.3687 -3.2015 -3.2185 38 1 3.6355 -0.9620 -3.9942 39 1 3.1746 0.8734 -2.1807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:35 Heat of formation + Delta-G solvation = 43.285366 kcal Electronic energy + Delta-G solvation = -19828.644849 eV Core-core repulsion = 16773.422393 eV Total energy + Delta-G solvation = -3055.222456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34045 -39.27514 -36.13404 -34.46536 -34.08564 -31.36945 -29.55425 -28.69076 -28.02779 -25.92978 -24.82083 -23.10286 -20.89239 -20.72311 -20.39324 -19.49244 -17.71756 -16.97141 -16.72855 -15.52982 -15.32286 -14.76232 -14.41820 -14.19358 -13.71331 -13.63083 -13.42614 -13.26898 -12.63796 -12.56030 -12.40425 -12.25015 -12.23673 -12.02462 -11.76974 -11.26475 -10.93476 -10.88468 -10.65524 -10.34637 -10.06577 -9.98096 -9.78494 -8.78786 -8.60734 -8.55046 -8.03345 -6.88053 -5.79191 -3.26959 2.27405 2.61894 2.79544 3.16999 3.34045 3.38090 3.41899 3.42991 4.40020 4.47282 4.54313 4.66361 4.96058 5.22394 5.25041 5.34038 5.35682 5.56273 5.60838 5.70159 5.71033 5.78768 5.87450 6.18860 6.35836 6.38521 6.54808 6.63019 6.66604 6.87068 7.07842 7.30194 7.31343 7.37087 7.62934 7.66988 7.75097 8.27920 8.33525 9.15847 9.77633 10.25366 11.25804 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.003710 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703201 B = 7544.537757 C = 7861.116731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 H 0.121 0.879 4 C 0.493 3.507 5 O -0.520 6.520 6 N -0.719 5.719 7 C 0.094 3.906 8 C 0.145 3.855 9 N -0.595 5.595 10 C 0.162 3.838 11 C -0.265 4.265 12 H 0.070 0.930 13 C 0.006 3.994 14 N -0.905 5.905 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.282 1.282 19 N -0.432 5.432 20 C 0.020 3.980 21 C -0.212 4.212 22 C -0.199 4.199 23 C -0.022 4.022 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.048 0.952 34 H -0.002 1.002 35 H 0.255 0.745 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 7.380 -15.842 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.006 3.994 3 H 0.138 0.862 4 C 0.276 3.724 5 O -0.395 6.395 6 N -0.371 5.371 7 C -0.031 4.031 8 C 0.016 3.984 9 N -0.318 5.318 10 C 0.017 3.983 11 C -0.394 4.394 12 H 0.088 0.912 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.738 3.262 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.208 1.208 19 N -0.108 5.108 20 C -0.110 4.110 21 C -0.237 4.237 22 C -0.224 4.224 23 C -0.150 4.150 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.229 0.771 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.016 0.984 35 H 0.065 0.935 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.812 6.661 -15.437 18.539 hybrid contribution 0.760 0.478 0.601 1.080 sum -7.052 7.139 -14.836 17.911 Atomic orbital electron populations 1.22117 0.91353 1.04170 1.03870 1.21328 0.96717 0.97503 0.83823 0.86157 1.20578 0.81496 0.85568 0.84807 1.90796 1.36768 1.25668 1.86227 1.46168 1.53102 1.31884 1.05908 1.22611 1.00502 0.97057 0.82935 1.20995 0.96324 0.95539 0.85547 1.43922 1.21691 1.40950 1.25223 1.20858 0.88566 0.90805 0.98023 1.19183 0.97340 0.96983 1.25899 0.91236 1.25073 0.98208 0.94894 1.01174 1.70052 1.41882 1.01800 1.41203 0.86289 0.82317 0.77536 0.80102 1.20957 1.21510 1.20837 1.43728 1.39868 1.10430 1.16770 1.21654 1.05675 0.85522 0.98148 1.20822 1.05343 0.99229 0.98269 1.20820 1.06429 0.93942 1.01179 1.21744 1.01685 0.99874 0.91722 0.90633 0.91083 0.89978 0.77116 0.92082 0.91235 0.93302 0.93941 0.95218 0.93352 0.98364 0.93495 0.82825 0.85003 0.84992 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.14 37.16 0.34 -0.87 16 2 C 0.11 1.20 3.36 -69.08 -0.23 0.97 16 3 H 0.12 0.96 8.06 -51.93 -0.42 0.54 16 4 C 0.49 7.35 7.11 -10.99 -0.08 7.27 16 5 O -0.52 -10.50 15.44 5.56 0.09 -10.42 16 6 N -0.72 -9.91 5.45 -60.29 -0.33 -10.23 16 7 C 0.09 1.77 6.00 -4.04 -0.02 1.75 16 8 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 9 N -0.60 -14.60 2.93 -181.12 -0.53 -15.13 16 10 C 0.16 3.92 9.01 59.85 0.54 4.46 16 11 C -0.26 -7.17 9.67 -15.06 -0.15 -7.31 16 12 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 13 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 14 N -0.91 -26.34 10.58 55.49 0.59 -25.75 16 15 Si 0.91 21.75 29.57 -169.99 -5.03 16.73 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.43 -5.53 2.40 -111.25 -0.27 -5.80 16 20 C 0.02 0.28 9.56 -16.75 -0.16 0.12 16 21 C -0.21 -2.85 10.86 -39.78 -0.43 -3.28 16 22 C -0.20 -2.51 10.86 -39.78 -0.43 -2.94 16 23 C -0.02 -0.26 11.39 -16.75 -0.19 -0.45 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.63 7.92 -51.93 -0.41 0.21 16 26 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 27 H 0.40 3.88 7.89 -40.82 -0.32 3.56 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 33 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 34 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 39 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -33.81 328.19 -7.50 -41.31 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.04 Total: 1.88 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.93 Total: 2.47 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.54 Total: -56.92 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.81 -7.50 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.599 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds