Wall clock time and date at job start Mon Mar 30 2020 00:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47264 * 2 1 4 4 C 1.50701 * 109.47592 * 119.99872 * 2 1 3 5 5 H 1.07997 * 119.99818 * 119.99692 * 4 2 1 6 6 C 1.37878 * 120.00055 * 300.00336 * 4 2 1 7 7 N 1.31517 * 119.99796 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47208 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47046 * 119.99793 * 8 6 4 11 11 H 1.48501 * 109.47289 * 239.99804 * 8 6 4 12 12 N 1.46898 * 109.46992 * 240.00420 * 2 1 3 13 13 C 1.46898 * 111.00435 * 84.99730 * 12 2 1 14 14 C 1.50705 * 109.47282 * 179.97438 * 13 12 2 15 15 C 1.34249 * 126.20304 * 270.00393 * 14 13 12 16 16 C 1.40812 * 108.02173 * 180.02562 * 15 14 13 17 17 N 1.29750 * 108.28599 * 0.11264 * 16 15 14 18 18 N 1.35298 * 126.20157 * 89.99812 * 14 13 12 19 19 C 1.46507 * 125.99383 * 359.93735 * 18 14 13 20 20 C 1.51036 * 122.21428 * 179.86294 * 16 15 14 21 21 C 1.53592 * 107.52479 * 344.11791 * 20 16 15 22 22 O 1.42908 * 109.92964 * 48.48713 * 21 20 16 23 23 C 1.43458 * 114.63759 * 287.59537 * 22 21 20 24 24 H 1.09001 * 109.47027 * 299.99882 * 1 2 3 25 25 H 1.08997 * 109.47402 * 59.99364 * 1 2 3 26 26 H 1.08994 * 109.47091 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99504 * 179.97438 * 7 6 4 28 28 H 1.00906 * 110.99956 * 208.95738 * 12 2 1 29 29 H 1.09006 * 109.47083 * 60.00204 * 13 12 2 30 30 H 1.09000 * 109.47050 * 300.00371 * 13 12 2 31 31 H 1.08996 * 109.46994 * 89.99623 * 19 18 14 32 32 H 1.09003 * 109.47030 * 209.99502 * 19 18 14 33 33 H 1.08997 * 109.47049 * 329.99888 * 19 18 14 34 34 H 1.08999 * 109.84362 * 103.62490 * 20 16 15 35 35 H 1.09005 * 109.84582 * 224.61281 * 20 16 15 36 36 H 1.09008 * 109.39331 * 168.62331 * 21 20 16 37 37 H 1.09001 * 109.39736 * 288.34534 * 21 20 16 38 38 H 1.09003 * 109.80902 * 171.02656 * 23 22 21 39 39 H 1.08996 * 109.80885 * 291.85238 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.1458 -2.2876 3.6037 10 1 3.1468 -0.1872 4.8164 11 1 1.1664 -1.5867 4.8161 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 3.8719 -0.6510 -3.9273 16 6 3.9085 -1.4173 -5.1081 17 7 2.6907 -1.7299 -5.4284 18 7 1.8315 -1.1801 -4.4635 19 6 0.3712 -1.2974 -4.4441 20 6 5.2032 -1.7564 -5.8081 21 6 6.2870 -0.8185 -5.2558 22 8 6.2420 -0.8100 -3.8275 23 6 5.1188 -0.1141 -3.2686 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7090 1.1613 3.4844 28 1 2.9173 -1.1205 -1.0288 29 1 2.7588 1.0463 -2.1183 30 1 1.0870 0.6164 -2.5525 31 1 -0.0673 -0.4678 -4.9986 32 1 0.0762 -2.2395 -4.9061 33 1 0.0184 -1.2721 -3.4131 34 1 5.4727 -2.7930 -5.6059 35 1 5.0942 -1.6041 -6.8819 36 1 7.2669 -1.1643 -5.5850 37 1 6.1166 0.1912 -5.6294 38 1 5.0734 -0.2892 -2.1937 39 1 5.2109 0.9540 -3.4652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:40 Heat of formation + Delta-G solvation = 30.277282 kcal Electronic energy + Delta-G solvation = -20422.181615 eV Core-core repulsion = 17366.395086 eV Total energy + Delta-G solvation = -3055.786529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41798 -38.08583 -36.13284 -33.65599 -32.79648 -31.68130 -30.46456 -28.57644 -27.42111 -25.50294 -24.53542 -23.78884 -23.27042 -19.93647 -19.46900 -19.20457 -16.98817 -16.41898 -15.80374 -15.46809 -15.32132 -15.02990 -14.78022 -14.21284 -13.65045 -13.58452 -13.46605 -13.19001 -12.80626 -12.46501 -12.38229 -11.94368 -11.82649 -11.58533 -11.22203 -10.94922 -10.84735 -10.81026 -10.54950 -10.34933 -10.22382 -10.08722 -9.65778 -9.00972 -8.87352 -8.54819 -8.09620 -7.46546 -6.09460 -4.15968 2.04769 2.64705 2.81979 3.26045 3.34347 3.39148 3.87794 4.36085 4.43039 4.71703 4.92647 5.06518 5.20127 5.22117 5.29108 5.32495 5.39322 5.43323 5.55251 5.58454 5.64955 5.65474 5.72854 5.85393 5.96989 6.21405 6.35467 6.73365 6.76956 7.00060 7.08719 7.16930 7.24001 7.35688 7.71054 7.77300 7.89690 8.15872 8.23891 8.52109 8.93060 9.50641 10.96923 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.005059 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.009806 B = 5533.085399 C = 6384.471961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.682 5.682 13 C 0.116 3.884 14 C 0.130 3.870 15 C -0.291 4.291 16 C 0.079 3.921 17 N -0.293 5.293 18 N -0.370 5.370 19 C 0.103 3.897 20 C -0.068 4.068 21 C 0.067 3.933 22 O -0.379 6.379 23 C 0.147 3.853 24 H 0.083 0.917 25 H 0.003 0.997 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.337 0.663 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -0.734 -14.772 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.314 5.314 13 C -0.015 4.015 14 C 0.003 3.997 15 C -0.304 4.304 16 C -0.089 4.089 17 N -0.114 5.114 18 N -0.152 5.152 19 C -0.038 4.038 20 C -0.107 4.107 21 C -0.011 4.011 22 O -0.297 6.297 23 C 0.069 3.931 24 H 0.101 0.899 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.453 -1.565 -15.505 15.962 hybrid contribution 0.990 0.583 1.456 1.855 sum 4.442 -0.982 -14.049 14.767 Atomic orbital electron populations 1.21735 0.97789 0.99394 0.99438 1.19155 0.92635 0.92479 0.85235 0.97809 1.21258 1.31573 1.12618 0.90254 0.92061 1.24905 0.94953 0.94952 0.99086 1.69897 1.36593 1.22856 1.23493 0.86452 0.78636 0.79671 0.82737 1.19684 1.21015 1.20978 1.60802 1.32802 1.32337 1.05502 1.20556 1.00363 0.93233 0.87395 1.20588 0.90438 0.95801 0.92849 1.20340 0.95047 1.12940 1.02029 1.21967 0.93599 0.97847 0.95523 1.76810 1.00070 1.21300 1.13198 1.48448 1.06624 1.41051 1.19038 1.21855 0.74219 1.03036 1.04691 1.20764 0.89121 1.01488 0.99365 1.22552 0.98385 0.98408 0.81763 1.87977 1.45327 1.76849 1.19519 1.20920 0.80674 0.94034 0.97436 0.89889 0.97827 0.94899 0.92906 0.84520 0.93307 0.90490 0.91385 0.89739 0.88305 0.89240 0.89445 0.88307 0.92920 0.88043 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.19 37.16 0.34 -2.60 16 2 C 0.21 5.10 2.60 -68.87 -0.18 4.92 16 3 H 0.00 0.11 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -13.78 8.59 -34.44 -0.30 -14.08 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -13.92 6.29 -109.22 -0.69 -14.61 16 13 C 0.12 2.00 5.38 -4.97 -0.03 1.97 16 14 C 0.13 2.18 6.42 -82.47 -0.53 1.65 16 15 C -0.29 -4.70 5.98 -104.96 -0.63 -5.33 16 16 C 0.08 1.24 7.22 -82.33 -0.59 0.65 16 17 N -0.29 -4.96 12.55 33.78 0.42 -4.54 16 18 N -0.37 -6.01 4.03 -64.06 -0.26 -6.27 16 19 C 0.10 1.32 11.11 59.85 0.66 1.98 16 20 C -0.07 -0.79 6.58 -27.41 -0.18 -0.97 16 21 C 0.07 0.71 6.74 37.46 0.25 0.97 16 22 O -0.38 -5.35 10.71 -35.23 -0.38 -5.73 16 23 C 0.15 2.12 7.03 36.10 0.25 2.37 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.34 7.00 8.22 -39.29 -0.32 6.67 16 29 H 0.05 0.83 7.98 -51.93 -0.41 0.42 16 30 H 0.08 1.29 7.04 -51.93 -0.37 0.93 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.31 7.67 -51.93 -0.40 0.91 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -30.25 319.28 -7.44 -37.69 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.94 Total: 3.67 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.02 Total: -6.87 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.11 Total: -49.47 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.38 Total: -5.73 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.25 -7.44 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.966 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds