Wall clock time and date at job start Mon Mar 30 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46707 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00417 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99529 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99805 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47335 * 180.02562 * 14 13 11 16 16 H 1.08997 * 115.54859 * 29.32401 * 15 14 13 17 17 C 1.53002 * 117.49773 * 243.62430 * 15 14 13 18 18 C 1.52993 * 117.50114 * 174.99919 * 15 14 13 19 19 H 1.09009 * 117.49838 * 214.97680 * 18 15 14 20 20 C 1.52999 * 117.50108 * 359.97012 * 18 15 14 21 21 C 1.54261 * 110.03327 * 297.91242 * 20 18 15 22 22 C 1.54971 * 104.15921 * 217.13280 * 21 20 18 23 23 C 1.54891 * 102.77705 * 37.88671 * 22 21 20 24 24 C 1.53872 * 110.03501 * 180.68872 * 20 18 15 25 25 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 27 27 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 28 28 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 29 29 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 30 30 H 0.96998 * 120.00230 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.46868 * 299.99546 * 14 13 11 32 32 H 1.08998 * 109.47585 * 59.99549 * 14 13 11 33 33 H 1.08993 * 117.49695 * 359.97438 * 17 15 14 34 34 H 1.09001 * 117.49700 * 145.02059 * 17 15 14 35 35 H 1.09006 * 110.01149 * 59.30256 * 20 18 15 36 36 H 1.08997 * 110.49129 * 335.77927 * 21 20 18 37 37 H 1.09000 * 110.48820 * 98.42450 * 21 20 18 38 38 H 1.09003 * 110.71988 * 279.57164 * 22 21 20 39 39 H 1.09000 * 110.76083 * 156.22547 * 22 21 20 40 40 H 1.08996 * 110.48295 * 203.40418 * 23 22 21 41 41 H 1.08998 * 110.48628 * 80.76009 * 23 22 21 42 42 H 1.08998 * 110.03530 * 238.57262 * 24 20 18 43 43 H 1.09004 * 110.03481 * 359.95604 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0018 14 6 1.4334 -7.4031 -0.0030 15 6 2.4276 -8.5660 -0.0029 16 1 3.3844 -8.3664 0.4796 17 6 2.4293 -9.4941 -1.2192 18 6 1.8591 -9.9815 0.1143 19 1 2.4421 -10.7134 0.6735 20 6 0.3398 -10.1259 0.2231 21 6 -0.1669 -9.4298 1.5030 22 6 -1.3075 -10.3491 2.0084 23 6 -0.7655 -11.7674 1.7021 24 6 -0.0409 -11.6114 0.3491 25 1 -0.4849 -0.8401 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.6241 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8905 29 1 2.8720 -3.6044 0.8894 30 1 3.1358 -6.1343 -0.0015 31 1 0.8065 -7.4615 0.8868 32 1 0.8070 -7.4602 -0.8931 33 1 1.7218 -9.2765 -2.0193 34 1 3.3874 -9.9053 -1.5372 35 1 -0.1400 -9.6906 -0.6536 36 1 0.6296 -9.3678 2.2445 37 1 -0.5511 -8.4366 1.2706 38 1 -2.2284 -10.1600 1.4566 39 1 -1.4637 -10.2181 3.0791 40 1 -1.5865 -12.4790 1.6154 41 1 -0.0655 -12.0835 2.4755 42 1 -0.7061 -11.8969 -0.4657 43 1 0.8567 -12.2297 0.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355152243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:53 Heat of formation + Delta-G solvation = -52.811748 kcal Electronic energy + Delta-G solvation = -19743.594018 eV Core-core repulsion = 16787.744822 eV Total energy + Delta-G solvation = -2955.849196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86512 -38.85084 -36.57880 -33.96192 -33.68628 -30.88194 -29.12927 -28.85500 -27.16306 -24.69392 -22.30293 -21.84059 -21.18378 -20.80943 -19.84944 -19.22499 -16.96576 -16.54125 -16.16719 -15.67269 -15.26414 -14.96183 -14.69415 -13.94249 -13.68892 -13.56478 -13.48045 -13.25177 -12.64351 -12.19194 -12.10078 -11.84195 -11.66648 -11.44494 -11.41947 -11.30650 -11.05494 -10.85798 -10.79623 -10.69107 -10.15394 -10.11326 -10.08034 -10.05776 -9.91856 -9.21603 -8.72777 -8.50301 -8.25813 -6.29676 -3.99511 3.20523 3.33207 3.46272 3.50513 3.65821 3.67495 4.23679 4.36002 4.39036 4.59399 4.69987 4.72178 4.78762 5.07675 5.17044 5.23051 5.28399 5.38868 5.41272 5.48060 5.48778 5.49849 5.56515 5.65482 5.69544 5.72191 5.80230 5.87555 5.96805 6.03229 6.07377 6.11756 6.15111 6.15961 6.23456 6.72547 6.78688 7.55282 7.60597 7.86590 8.22840 8.52659 8.73519 8.95113 9.74213 11.11418 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.003031 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.345989 B = 9235.050943 C = 9752.505707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.608 4.608 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.508 3.492 12 O -0.540 6.540 13 N -0.741 5.741 14 C 0.143 3.857 15 C -0.162 4.162 16 H 0.109 0.891 17 C -0.174 4.174 18 C -0.131 4.131 19 H 0.106 0.894 20 C -0.065 4.065 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.117 4.117 25 H 0.272 0.728 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.397 0.603 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 -25.125 1.318 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.646 4.646 8 H 0.068 0.932 9 C -0.013 4.013 10 C -0.163 4.163 11 C 0.297 3.703 12 O -0.415 6.415 13 N -0.395 5.395 14 C 0.019 3.981 15 C -0.181 4.181 16 H 0.127 0.873 17 C -0.210 4.210 18 C -0.150 4.150 19 H 0.124 0.876 20 C -0.083 4.083 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.231 0.769 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.587 -23.475 1.303 23.783 hybrid contribution 0.855 -1.800 -0.044 1.993 sum 4.442 -25.275 1.259 25.693 Atomic orbital electron populations 1.70702 1.06913 1.31022 1.46141 1.25854 0.96593 1.02694 0.93865 0.83499 0.74577 0.75106 0.76679 1.21490 1.21001 1.21532 1.22069 0.94185 0.92030 1.56363 0.93249 1.19015 0.93849 0.91190 0.97290 1.21715 1.00402 0.91536 1.02661 1.21530 0.88621 0.85735 0.74459 1.90651 1.14517 1.87770 1.48612 1.46193 1.10064 1.05568 1.77692 1.21059 0.93319 0.81260 1.02416 1.22536 1.00874 0.91314 1.03347 0.87338 1.23221 1.02783 1.03452 0.91589 1.22519 0.95660 0.96241 1.00583 0.87636 1.21394 0.92434 0.95725 0.98743 1.22590 0.97906 0.98909 0.96671 1.22535 0.98352 0.94739 1.00858 1.22365 0.99512 0.97202 0.97159 1.22188 1.00094 0.95708 0.97469 0.91694 0.96752 0.96748 0.90138 0.90124 0.76933 0.90519 0.91972 0.88577 0.88773 0.90827 0.91282 0.90808 0.91503 0.91634 0.91945 0.91805 0.91932 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.20 13.65 55.43 0.76 -28.44 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.61 -17.77 9.11 -34.44 -0.31 -18.08 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.58 5.64 -27.88 -0.16 -2.74 16 11 C 0.51 10.03 7.83 -10.99 -0.09 9.95 16 12 O -0.54 -12.92 15.98 5.56 0.09 -12.83 16 13 N -0.74 -10.72 5.56 -60.29 -0.33 -11.06 16 14 C 0.14 1.83 4.85 -4.04 -0.02 1.81 16 15 C -0.16 -1.52 5.77 -90.62 -0.52 -2.05 16 16 H 0.11 0.92 8.04 -51.93 -0.42 0.50 16 17 C -0.17 -1.46 9.83 -26.73 -0.26 -1.72 16 18 C -0.13 -1.09 4.85 -90.62 -0.44 -1.53 16 19 H 0.11 0.78 7.91 -51.92 -0.41 0.37 16 20 C -0.06 -0.56 2.50 -89.51 -0.22 -0.79 16 21 C -0.12 -1.19 4.77 -25.03 -0.12 -1.30 16 22 C -0.13 -1.09 6.91 -24.69 -0.17 -1.26 16 23 C -0.12 -0.92 6.83 -25.07 -0.17 -1.10 16 24 C -0.12 -0.88 6.46 -25.61 -0.17 -1.05 16 25 H 0.27 8.86 7.22 -40.82 -0.29 8.56 16 26 H 0.01 0.42 7.97 -51.93 -0.41 0.01 16 27 H 0.01 0.42 7.97 -51.93 -0.41 0.01 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.40 4.54 8.40 -40.82 -0.34 4.19 16 31 H 0.08 1.05 5.05 -51.93 -0.26 0.79 16 32 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 33 H 0.10 0.86 7.96 -51.93 -0.41 0.45 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 36 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 37 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 7.53 -51.93 -0.39 0.06 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -34.14 341.81 -9.78 -43.92 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.51 Total: 1.50 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.85 Total: -18.96 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.42 Total: -39.49 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.14 -9.78 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355152243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.891 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds