Wall clock time and date at job start Mon Mar 30 2020 00:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.50697 * 119.99790 * 2 1 4 4 C 1.52999 * 109.47278 * 95.44094 * 3 2 1 5 5 C 1.52997 * 109.47410 * 175.00274 * 4 3 2 6 6 C 1.53007 * 109.47140 * 295.00171 * 4 3 2 7 7 C 1.47102 * 120.00227 * 180.02562 * 2 1 3 8 8 O 1.21610 * 119.99729 * 260.59272 * 7 2 1 9 9 N 1.34775 * 120.00104 * 80.59498 * 7 2 1 10 10 C 1.46920 * 120.63031 * 355.02312 * 9 7 2 11 11 C 1.53198 * 108.77412 * 126.43651 * 10 9 7 12 12 C 1.53035 * 109.31287 * 54.63455 * 11 10 9 13 13 C 1.53039 * 109.53778 * 298.63767 * 12 11 10 14 14 H 1.09000 * 109.49516 * 301.37731 * 13 12 11 15 15 C 1.50703 * 109.49809 * 181.31867 * 13 12 11 16 16 H 1.07998 * 119.99919 * 0.06252 * 15 13 12 17 17 C 1.37881 * 120.00129 * 180.33907 * 15 13 12 18 18 N 1.31511 * 119.99520 * 359.72350 * 17 15 13 19 19 Si 1.86794 * 120.00075 * 179.72170 * 17 15 13 20 20 H 1.48507 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47082 * 120.00041 * 19 17 15 22 22 H 1.48499 * 109.47097 * 240.00138 * 19 17 15 23 23 C 1.46935 * 120.60222 * 175.05014 * 9 7 2 24 24 H 1.07992 * 120.00255 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99534 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47538 * 215.43928 * 3 2 1 27 27 H 1.09009 * 109.47243 * 335.44465 * 3 2 1 28 28 H 1.08998 * 109.47034 * 54.99942 * 4 3 2 29 29 H 1.08999 * 109.47461 * 60.00352 * 5 4 3 30 30 H 1.09006 * 109.46744 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46852 * 299.99730 * 5 4 3 32 32 H 1.09004 * 109.47063 * 59.99439 * 6 4 3 33 33 H 1.08993 * 109.47398 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.46969 * 299.99810 * 6 4 3 35 35 H 1.08998 * 109.58976 * 6.65012 * 10 9 7 36 36 H 1.09003 * 109.59056 * 246.22163 * 10 9 7 37 37 H 1.08996 * 109.49536 * 294.68249 * 11 10 9 38 38 H 1.09001 * 109.50050 * 174.58678 * 11 10 9 39 39 H 1.09003 * 109.46253 * 178.61683 * 12 11 10 40 40 H 1.09003 * 109.45071 * 58.64554 * 12 11 10 41 41 H 0.97005 * 119.99289 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.56260 * 113.76131 * 23 9 7 43 43 H 1.08999 * 109.61236 * 353.33023 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.4569 1.6784 1.4360 5 6 3.3277 2.9363 1.4259 6 6 1.1835 1.9461 2.2410 7 6 2.0655 -1.2739 -0.0006 8 8 2.5186 -1.7148 1.0383 9 7 2.2373 -1.9524 -1.1524 10 6 1.6045 -1.4899 -2.3950 11 6 2.6817 -1.3539 -3.4759 12 6 3.4348 -2.6794 -3.6095 13 6 4.1209 -3.0142 -2.2831 14 1 4.8063 -2.2102 -2.0150 15 6 4.8888 -4.3031 -2.4253 16 1 4.8887 -4.8306 -3.3677 17 6 5.5869 -4.8119 -1.3506 18 7 5.5869 -4.1695 -0.2030 19 14 6.5323 -6.4135 -1.5246 20 1 6.3730 -6.9348 -2.9060 21 1 7.9713 -6.1712 -1.2492 22 1 6.0036 -7.4080 -0.5568 23 6 3.0607 -3.1688 -1.1883 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 2.9902 1.2012 -0.5959 27 1 1.4555 2.0872 -0.4271 28 1 3.0096 0.8575 1.8928 29 1 2.7750 3.7573 0.9692 30 1 3.5941 3.2020 2.4490 31 1 4.2348 2.7456 0.8525 32 1 0.5630 1.0500 2.2481 33 1 1.4495 2.2116 3.2640 34 1 0.6308 2.7671 1.7842 35 1 1.1319 -0.5223 -2.2264 36 1 0.8553 -2.2140 -2.7151 37 1 3.3801 -0.5652 -3.1961 38 1 2.2127 -1.1044 -4.4276 39 1 4.1856 -2.5929 -4.3950 40 1 2.7317 -3.4722 -3.8648 41 1 6.0783 -4.5273 0.5530 42 1 2.4301 -4.0299 -1.4093 43 1 3.5490 -3.3087 -0.2239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347315744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:32 Heat of formation + Delta-G solvation = -45.011667 kcal Electronic energy + Delta-G solvation = -21150.392498 eV Core-core repulsion = 18194.881539 eV Total energy + Delta-G solvation = -2955.510959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61683 -37.15058 -36.21685 -33.54289 -32.58568 -31.56287 -29.71362 -27.18630 -26.60427 -25.18370 -24.88679 -21.86516 -21.68496 -20.17490 -19.19805 -17.77444 -16.41584 -15.87159 -15.43408 -15.28915 -14.55085 -14.32538 -14.03377 -13.71931 -13.57697 -13.38484 -12.90054 -12.61035 -12.53000 -12.20808 -12.14315 -11.91529 -11.74874 -11.50268 -11.10594 -10.99515 -10.88007 -10.70079 -10.54619 -10.47699 -10.36868 -10.23026 -9.88581 -9.33461 -9.15068 -8.97377 -8.79020 -8.42525 -7.71624 -5.99464 -4.08116 2.03952 3.24016 3.30898 3.38790 3.41761 3.84327 4.43398 4.83720 4.93752 5.01919 5.08158 5.30730 5.35720 5.39389 5.52444 5.60924 5.67881 5.69073 5.76987 5.81926 5.85956 5.93312 6.00969 6.02426 6.17132 6.20493 6.32778 6.34147 6.47638 6.50764 6.62223 6.67295 6.72731 6.87529 6.98349 7.17609 7.31271 7.65281 7.87961 8.00939 8.28575 8.39552 8.88445 8.97261 9.57607 11.05931 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.005468 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.960858 B = 5119.722663 C = 5668.629184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.068 4.068 4 C -0.096 4.096 5 C -0.145 4.145 6 C -0.146 4.146 7 C 0.542 3.458 8 O -0.534 6.534 9 N -0.601 5.601 10 C 0.109 3.891 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.112 3.888 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 12.116 -1.487 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.114 4.114 5 C -0.202 4.202 6 C -0.203 4.203 7 C 0.328 3.672 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.008 4.008 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.514 11.843 -0.750 15.210 hybrid contribution 0.470 -0.919 -0.138 1.041 sum -9.044 10.924 -0.888 14.210 Atomic orbital electron populations 1.24179 0.94154 1.02209 0.99842 1.21758 0.95663 0.95173 1.00925 1.20620 0.99953 0.92547 0.97488 1.21072 0.96887 0.98477 0.94974 1.21828 0.99614 0.97134 1.01639 1.21864 0.97504 1.01445 0.99465 1.18522 0.80256 0.84232 0.84144 1.90812 1.49879 1.69183 1.31308 1.48521 1.49459 1.28202 1.07103 1.21643 0.95231 0.99285 0.85317 1.21944 0.98036 0.99942 0.97226 1.21628 0.98441 0.94391 1.00390 1.18969 0.92553 0.97308 0.89061 0.95376 1.21123 1.30038 1.07273 0.97469 0.92306 1.25058 0.96283 0.97329 0.95382 1.69898 1.41634 1.38578 1.01701 0.86537 0.79723 0.83668 0.78093 1.19781 1.21001 1.20974 1.22298 0.91017 0.81570 1.05922 0.87385 0.88176 0.90892 0.90869 0.90031 0.92968 0.92728 0.92582 0.92209 0.92996 0.93184 0.90852 0.92202 0.92197 0.92283 0.93036 0.93213 0.92711 0.94075 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 11.98 28.91 0.35 -1.71 16 2 C -0.13 -2.01 2.77 -102.85 -0.28 -2.29 16 3 C -0.07 -0.90 4.86 -27.89 -0.14 -1.04 16 4 C -0.10 -1.26 2.91 -90.62 -0.26 -1.52 16 5 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 6 C -0.15 -1.67 8.83 37.16 0.33 -1.34 16 7 C 0.54 11.14 7.08 -12.67 -0.09 11.06 16 8 O -0.53 -13.43 16.54 5.27 0.09 -13.35 16 9 N -0.60 -12.28 2.97 -174.16 -0.52 -12.80 16 10 C 0.11 1.74 6.28 -3.71 -0.02 1.72 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 12 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 13 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -14.17 8.57 -34.44 -0.30 -14.46 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -25.86 11.38 55.43 0.63 -25.23 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.11 2.76 5.38 -3.71 -0.02 2.74 16 24 H 0.11 1.03 8.02 -52.49 -0.42 0.61 16 25 H 0.10 1.25 8.05 -52.49 -0.42 0.83 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.77 8.00 -51.92 -0.42 0.36 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.99 5.88 -51.93 -0.31 0.68 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.12 3.52 5.14 -51.93 -0.27 3.25 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -30.96 340.01 -8.02 -38.98 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.63 Total: 1.28 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.69 Total: -10.35 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.11 Total: -38.02 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.96 -8.02 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347315744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.032 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds