Wall clock time and date at job start Mon Mar 30 2020 01:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46978 * 2 1 4 4 C 1.52997 * 109.47328 * 240.00333 * 2 1 3 5 5 C 1.52999 * 117.50353 * 128.61614 * 4 2 1 6 6 C 1.52992 * 60.00030 * 252.50997 * 5 4 2 7 7 N 1.46498 * 109.47566 * 120.00019 * 2 1 3 8 8 C 1.46498 * 120.00153 * 59.99725 * 7 2 1 9 9 C 1.50698 * 109.47352 * 270.00557 * 8 7 2 10 10 H 1.08000 * 119.99750 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99922 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99828 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47234 * 59.99601 * 13 11 9 15 15 H 1.48500 * 109.47365 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47174 * 299.99573 * 13 11 9 17 17 C 1.34783 * 120.00123 * 240.00436 * 7 2 1 18 18 O 1.21281 * 120.00146 * 180.02562 * 17 7 2 19 19 C 1.50697 * 119.99698 * 359.97438 * 17 7 2 20 20 C 1.54961 * 110.92464 * 66.54433 * 19 17 7 21 21 C 1.54270 * 104.16191 * 156.29299 * 20 19 17 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.46880 * 299.99969 * 1 2 3 25 25 H 1.08996 * 109.47281 * 60.00063 * 1 2 3 26 26 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 27 27 H 1.09004 * 115.54794 * 274.32834 * 4 2 1 28 28 H 1.08996 * 117.49773 * 0.02562 * 5 4 2 29 29 H 1.09003 * 117.49602 * 145.01823 * 5 4 2 30 30 H 1.09007 * 117.50386 * 252.50586 * 6 5 4 31 31 H 1.09004 * 117.52073 * 107.48230 * 6 5 4 32 32 H 1.08999 * 109.46745 * 30.00231 * 8 7 2 33 33 H 1.09001 * 109.47314 * 150.00348 * 8 7 2 34 34 H 0.96994 * 119.99526 * 180.02562 * 12 11 9 35 35 H 1.09001 * 110.67717 * 303.23484 * 19 17 7 36 36 H 1.08997 * 110.47708 * 37.63897 * 20 19 17 37 37 H 1.09002 * 110.53308 * 274.97289 * 20 19 17 38 38 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 39 39 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 40 40 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 41 41 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 42 42 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 43 43 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.0741 0.0053 -2.1117 6 6 1.6357 -0.1495 -2.6096 7 7 2.0184 -0.6906 1.1961 8 6 1.6645 -2.0931 1.4280 9 6 0.3831 -2.1640 2.2179 10 1 -0.1174 -1.2551 2.5176 11 6 -0.1497 -3.3890 2.5589 12 7 0.4601 -4.4958 2.1944 13 14 -1.7377 -3.4768 3.5387 14 1 -2.8260 -2.8113 2.7783 15 1 -2.0965 -4.8985 3.7736 16 1 -1.5535 -2.7903 4.8425 17 6 2.7932 -0.0355 2.0833 18 8 3.1980 -0.6074 3.0733 19 6 3.1576 1.4071 1.8446 20 6 1.9052 2.3157 1.9299 21 6 2.4716 3.7075 2.2789 22 6 3.8347 3.4721 2.9529 23 6 4.0497 1.9449 2.9909 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 2.1267 -1.8044 -1.1642 28 1 3.3913 0.9968 -1.7890 29 1 3.8415 -0.6000 -2.5942 30 1 1.4567 -0.8566 -3.4197 31 1 1.0060 0.7402 -2.6146 32 1 1.5296 -2.5968 0.4708 33 1 2.4630 -2.5818 1.9864 34 1 0.0850 -5.3576 2.4340 35 1 3.6542 1.5243 0.8813 36 1 1.2350 1.9684 2.7162 37 1 1.3874 2.3440 0.9711 38 1 1.7997 4.2227 2.9654 39 1 2.6008 4.2964 1.3709 40 1 4.6255 3.9461 2.3715 41 1 3.8247 3.8738 3.9661 42 1 5.0961 1.7023 2.8059 43 1 3.7285 1.5382 3.9499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069520421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:09 Heat of formation + Delta-G solvation = -28.347856 kcal Electronic energy + Delta-G solvation = -21525.539114 eV Core-core repulsion = 18570.750752 eV Total energy + Delta-G solvation = -2954.788362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79629 -37.65938 -36.64491 -34.52651 -32.56153 -29.67987 -29.42673 -28.51065 -26.92527 -23.76605 -23.12812 -22.08519 -21.14619 -20.12978 -19.75271 -18.08511 -17.04673 -16.36795 -15.76386 -15.14409 -14.85077 -14.45101 -14.35695 -13.74789 -13.55018 -13.18687 -12.85349 -12.52750 -12.10190 -11.89356 -11.83198 -11.53679 -11.29621 -11.24113 -11.09313 -10.94967 -10.84880 -10.82551 -10.54538 -10.50936 -10.39554 -10.27820 -10.21559 -9.91377 -9.75386 -9.45783 -8.72747 -8.37921 -7.57459 -5.99461 -4.02462 3.33516 3.38235 3.40306 3.50843 3.85522 4.13273 4.48021 4.68751 4.73762 4.87974 4.94807 5.14201 5.20977 5.34809 5.42369 5.45916 5.51728 5.61432 5.66938 5.74369 5.76435 5.77932 5.80533 5.94468 5.99593 6.00902 6.03454 6.12587 6.22340 6.26942 6.38000 6.41303 6.49931 6.56511 6.57483 7.01892 7.16219 7.52028 7.64244 7.97825 8.30466 8.53371 8.96684 9.19447 9.61522 11.08696 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.007457 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.926626 B = 3753.789103 C = 4729.579958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.082 0.918 4 C -0.156 4.156 5 C -0.184 4.184 6 C -0.175 4.175 7 N -0.589 5.589 8 C 0.247 3.753 9 C -0.517 4.517 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.513 3.487 18 O -0.542 6.542 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.104 4.104 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 14.607 -7.183 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.100 0.900 4 C -0.175 4.175 5 C -0.221 4.221 6 C -0.213 4.213 7 N -0.319 5.319 8 C 0.127 3.873 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.299 3.701 18 O -0.420 6.420 19 C -0.137 4.137 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.684 14.071 -6.638 15.988 hybrid contribution -0.952 -0.238 0.403 1.061 sum 2.732 13.833 -6.235 15.417 Atomic orbital electron populations 1.22113 0.94440 1.04423 1.00272 1.20656 0.94838 0.94852 0.83564 0.90000 1.22790 1.02643 1.00713 0.91358 1.22981 0.92538 1.01745 1.04862 1.22872 0.97691 1.03147 0.97571 1.48210 1.48566 1.14602 1.20556 1.19206 0.96255 0.75040 0.96755 1.21400 1.07489 0.92293 1.34398 0.92456 1.24918 0.97576 0.95606 0.96044 1.69922 1.39513 0.97494 1.46628 0.86632 0.83563 0.76895 0.80763 1.20300 1.21279 1.20282 1.20206 0.78838 0.87750 0.83260 1.90651 1.54413 1.68820 1.28116 1.22305 0.97710 0.93221 1.00479 1.22491 0.96585 0.93990 1.02268 1.22127 0.96698 0.96991 1.00198 1.22149 0.96971 0.96582 1.00494 1.22194 0.99092 0.93826 0.99115 0.92634 0.93265 0.89962 0.86876 0.89229 0.89197 0.89026 0.88929 0.94986 0.94178 0.92800 0.89132 0.90871 0.90894 0.91881 0.91977 0.92119 0.91925 0.91689 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.31 37.16 0.31 -2.27 16 2 C 0.17 2.73 2.23 -67.93 -0.15 2.58 16 3 H 0.08 1.16 3.83 -51.93 -0.20 0.96 16 4 C -0.16 -2.39 5.15 -90.62 -0.47 -2.86 16 5 C -0.18 -2.28 10.18 -26.74 -0.27 -2.55 16 6 C -0.18 -2.13 9.73 -26.74 -0.26 -2.39 16 7 N -0.59 -12.39 2.39 -167.48 -0.40 -12.79 16 8 C 0.25 6.39 4.57 -5.20 -0.02 6.37 16 9 C -0.52 -14.40 7.83 -34.44 -0.27 -14.67 16 10 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 13 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 C 0.51 10.83 7.05 -10.98 -0.08 10.76 16 18 O -0.54 -13.92 15.31 5.56 0.09 -13.84 16 19 C -0.12 -1.79 2.26 -89.74 -0.20 -1.99 16 20 C -0.12 -1.56 5.56 -25.03 -0.14 -1.70 16 21 C -0.12 -1.34 6.80 -25.61 -0.17 -1.51 16 22 C -0.12 -1.40 6.80 -25.62 -0.17 -1.57 16 23 C -0.10 -1.51 5.90 -25.07 -0.15 -1.66 16 24 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.05 0.66 7.29 -51.93 -0.38 0.29 16 26 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 27 H 0.11 2.02 6.59 -51.93 -0.34 1.68 16 28 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.01 7.61 -51.93 -0.39 0.61 16 32 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.09 1.24 7.66 -51.93 -0.40 0.84 16 36 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.07 0.89 6.25 -51.93 -0.32 0.57 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -31.56 334.28 -8.97 -40.52 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.25 Total: 1.92 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.15 Total: -11.85 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.34 Total: -38.71 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.56 -8.97 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069520421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.176 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds