Wall clock time and date at job start Mon Mar 30 2020 00:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29311 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48508 * 109.47009 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47220 * 119.99894 * 3 2 1 6 6 H 1.48500 * 109.47226 * 240.00171 * 3 2 1 7 7 C 1.46787 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99843 * 186.47156 * 7 2 1 9 9 N 1.33318 * 120.00071 * 6.46781 * 7 2 1 10 10 C 1.34774 * 119.99889 * 44.35406 * 9 7 2 11 11 O 1.21488 * 120.00415 * 5.37137 * 10 9 7 12 12 C 1.47555 * 119.99631 * 185.37203 * 10 9 7 13 13 C 1.41554 * 126.46910 * 184.40279 * 12 10 9 14 14 C 1.35333 * 105.54478 * 179.97438 * 13 12 10 15 15 N 1.48016 * 126.42083 * 179.97438 * 14 13 12 16 16 O 1.31696 * 120.00348 * 179.97438 * 15 14 13 17 17 O 1.31702 * 119.99783 * 359.97438 * 15 14 13 18 18 N 1.35615 * 107.16679 * 359.97438 * 14 13 12 19 19 H 0.96999 * 124.93393 * 180.02562 * 18 14 13 20 20 N 1.28480 * 110.13370 * 359.74567 * 18 14 13 21 21 C 1.46504 * 119.99942 * 224.35816 * 9 7 2 22 22 C 1.52997 * 117.49961 * 2.14571 * 21 9 7 23 23 C 1.53003 * 117.49550 * 293.48798 * 21 9 7 24 24 H 0.96994 * 120.00491 * 354.99142 * 1 2 3 25 25 H 1.08005 * 127.22805 * 359.97016 * 13 12 10 26 26 H 1.09001 * 115.55073 * 147.82251 * 21 9 7 27 27 H 1.09004 * 117.49964 * 0.02562 * 22 21 9 28 28 H 1.09001 * 117.49961 * 145.02259 * 22 21 9 29 29 H 1.09002 * 117.50187 * 214.97819 * 23 21 9 30 30 H 1.09002 * 117.50103 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 1.2620 2.7465 0.0006 5 1 3.0809 1.6964 1.2126 6 1 3.0808 1.6964 -1.2125 7 6 2.0271 -1.2712 -0.0006 8 1 3.1019 -1.2742 0.1049 9 7 1.3669 -2.4221 -0.1311 10 6 0.3923 -2.5388 -1.0547 11 8 0.1810 -1.6303 -1.8331 12 6 -0.4180 -3.7702 -1.1205 13 6 -1.4106 -4.0738 -2.0829 14 6 -1.8791 -5.2982 -1.7468 15 7 -2.9359 -6.0585 -2.4511 16 8 -3.2957 -7.2469 -2.0124 17 8 -3.5165 -5.5463 -3.5166 18 7 -1.1990 -5.6981 -0.6438 19 1 -1.3316 -6.5426 -0.1854 20 7 -0.3495 -4.7985 -0.2977 21 6 1.7008 -3.5598 0.7294 22 6 2.7814 -3.3488 1.7917 23 6 3.0803 -4.1976 0.5534 24 1 -0.4850 0.8367 0.0733 25 1 -1.7275 -3.4577 -2.9114 26 1 0.8698 -4.2190 0.9807 27 1 3.2437 -2.3634 1.8507 28 1 2.6616 -3.8695 2.7418 29 1 3.1571 -5.2764 0.6894 30 1 3.7393 -3.7711 -0.2028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285240777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:41 Heat of formation + Delta-G solvation = 132.795299 kcal Electronic energy + Delta-G solvation = -19984.299209 eV Core-core repulsion = 16595.866095 eV Total energy + Delta-G solvation = -3388.433114 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.02674 -38.91225 -38.53195 -36.12533 -34.61026 -33.08985 -32.09011 -31.78249 -31.13516 -26.82998 -25.53804 -23.13239 -21.81205 -21.74304 -21.06552 -20.21660 -19.07944 -18.07466 -17.22934 -16.67674 -16.35422 -15.69289 -15.24018 -14.69637 -14.46835 -14.00104 -13.86367 -13.17062 -13.07769 -12.15654 -11.71397 -11.57760 -11.37567 -11.19551 -11.00012 -10.93893 -10.87616 -10.81182 -10.37132 -10.02906 -9.85565 -9.60340 -9.42875 -8.97612 -8.43917 -7.35689 -6.40438 -3.95177 -0.72304 0.58692 1.53993 2.04794 2.55511 3.16967 3.21725 3.23890 4.02626 4.23188 4.36636 4.41710 4.71191 4.76102 5.02490 5.12009 5.35828 5.56996 5.65959 5.73378 5.96792 6.09878 6.18510 6.34862 6.45687 6.58974 6.79953 6.91612 7.27053 7.53888 7.97902 8.65867 9.03534 9.36609 10.15234 10.61451 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.006042 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.405845 B = 4632.824542 C = 5507.563466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.068 3.932 3 Si 0.922 3.078 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.519 3.481 11 O -0.518 6.518 12 C 0.044 3.956 13 C -0.066 4.066 14 C 0.080 3.920 15 N 0.017 4.983 16 O -0.188 6.188 17 O -0.143 6.143 18 N -0.367 5.367 19 H 0.454 0.546 20 N -0.195 5.195 21 C 0.056 3.944 22 C -0.174 4.174 23 C -0.203 4.203 24 H 0.276 0.724 25 H 0.190 0.810 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -8.558 1.865 8.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.151 4.151 3 Si 0.748 3.252 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.499 4.499 8 H 0.105 0.895 9 N -0.094 5.094 10 C 0.306 3.694 11 O -0.395 6.395 12 C -0.115 4.115 13 C -0.098 4.098 14 C -0.129 4.129 15 N 0.493 4.507 16 O -0.374 6.374 17 O -0.336 6.336 18 N -0.089 5.089 19 H 0.301 0.699 20 N -0.037 5.037 21 C -0.050 4.050 22 C -0.212 4.212 23 C -0.242 4.242 24 H 0.088 0.912 25 H 0.207 0.793 26 H 0.151 0.849 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.751 -8.052 2.556 8.482 hybrid contribution -0.566 0.162 -0.420 0.723 sum 0.186 -7.890 2.136 8.176 Atomic orbital electron populations 1.68836 1.08111 1.29196 1.35418 1.26957 0.94471 0.99866 0.93843 0.86131 0.79493 0.80463 0.79162 1.20851 1.19709 1.19382 1.19732 0.91013 0.81661 1.57482 0.89494 1.41399 1.32172 1.09613 1.26241 1.16367 0.85372 0.83656 0.83981 1.90629 1.69201 1.38235 1.41431 1.23313 0.99070 0.96231 0.92870 1.21807 0.95053 0.91550 1.01396 1.21015 0.99048 0.95749 0.97061 1.49355 0.99241 1.01421 1.00725 1.96291 1.69291 1.01266 1.70576 1.96340 1.54454 1.72346 1.10462 1.43748 1.26486 1.18679 1.19958 0.69896 1.74141 1.08615 0.98986 1.21975 1.22546 0.92215 0.93328 0.96924 1.23104 1.03869 1.01849 0.92383 1.23252 1.01798 0.97867 1.01312 0.91200 0.79278 0.84853 0.87484 0.89731 0.89824 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.52 11.17 56.00 0.63 -20.89 16 2 C 0.07 1.77 4.90 -15.16 -0.07 1.70 16 3 Si 0.92 19.95 29.65 -169.99 -5.04 14.91 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.37 -9.44 8.14 -13.45 -0.11 -9.55 16 8 H 0.09 2.14 7.21 -52.49 -0.38 1.76 16 9 N -0.38 -9.06 2.80 -107.35 -0.30 -9.36 16 10 C 0.52 12.78 6.80 -12.46 -0.08 12.69 16 11 O -0.52 -14.54 14.53 5.38 0.08 -14.46 16 12 C 0.04 0.86 6.88 -82.79 -0.57 0.30 16 13 C -0.07 -1.14 10.53 -39.35 -0.41 -1.55 16 14 C 0.08 1.24 8.25 -144.04 -1.19 0.05 16 15 N 0.02 0.26 4.98 32.99 0.16 0.43 16 16 O -0.19 -2.88 19.97 -31.57 -0.63 -3.51 16 17 O -0.14 -2.36 19.77 -31.57 -0.62 -2.98 16 18 N -0.37 -4.96 6.86 32.94 0.23 -4.74 16 19 H 0.45 4.38 8.96 -190.43 -1.71 2.67 16 20 N -0.19 -3.23 8.65 33.41 0.29 -2.94 16 21 C 0.06 1.08 5.62 -67.93 -0.38 0.70 16 22 C -0.17 -2.99 9.78 -26.70 -0.26 -3.26 16 23 C -0.20 -3.39 10.36 -26.69 -0.28 -3.67 16 24 H 0.28 7.11 8.27 -40.82 -0.34 6.77 16 25 H 0.19 3.10 8.06 -52.48 -0.42 2.68 16 26 H 0.13 2.44 5.11 -51.93 -0.27 2.17 16 27 H 0.11 1.99 6.70 -51.93 -0.35 1.64 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 279.70 15.07 4.21 4.21 Total: -1.00 -29.99 279.70 -7.88 -37.87 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.52 Total: 4.05 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.36 Total: -2.60 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 1.00 Total: -37.50 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.18 Total: -20.95 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.04 Total: 14.91 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.99 -7.88 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.668 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds