Wall clock time and date at job start Mon Mar 30 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29311 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48508 * 109.47009 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47220 * 119.99894 * 3 2 1 6 6 H 1.48500 * 109.47226 * 240.00171 * 3 2 1 7 7 C 1.46787 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99843 * 186.47156 * 7 2 1 9 9 N 1.33318 * 120.00071 * 6.46781 * 7 2 1 10 10 C 1.34774 * 119.99889 * 44.35406 * 9 7 2 11 11 O 1.21488 * 120.00415 * 5.37137 * 10 9 7 12 12 C 1.47555 * 119.99631 * 185.37203 * 10 9 7 13 13 C 1.41554 * 126.46910 * 184.40279 * 12 10 9 14 14 C 1.35333 * 105.54478 * 179.97438 * 13 12 10 15 15 N 1.48016 * 126.42083 * 179.97438 * 14 13 12 16 16 O 1.31696 * 120.00348 * 179.97438 * 15 14 13 17 17 O 1.31702 * 119.99783 * 359.97438 * 15 14 13 18 18 N 1.35615 * 107.16679 * 359.97438 * 14 13 12 19 19 H 0.96999 * 124.93393 * 180.02562 * 18 14 13 20 20 N 1.28480 * 110.13370 * 359.74567 * 18 14 13 21 21 C 1.46504 * 119.99942 * 224.35816 * 9 7 2 22 22 C 1.52997 * 117.49961 * 2.14571 * 21 9 7 23 23 C 1.53003 * 117.49550 * 293.48798 * 21 9 7 24 24 H 0.96994 * 120.00491 * 354.99142 * 1 2 3 25 25 H 1.08005 * 127.22805 * 359.97016 * 13 12 10 26 26 H 1.09001 * 115.55073 * 147.82251 * 21 9 7 27 27 H 1.09004 * 117.49964 * 0.02562 * 22 21 9 28 28 H 1.09001 * 117.49961 * 145.02259 * 22 21 9 29 29 H 1.09002 * 117.50187 * 214.97819 * 23 21 9 30 30 H 1.09002 * 117.50103 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 1.2620 2.7465 0.0006 5 1 3.0809 1.6964 1.2126 6 1 3.0808 1.6964 -1.2125 7 6 2.0271 -1.2712 -0.0006 8 1 3.1019 -1.2742 0.1049 9 7 1.3669 -2.4221 -0.1311 10 6 0.3923 -2.5388 -1.0547 11 8 0.1810 -1.6303 -1.8331 12 6 -0.4180 -3.7702 -1.1205 13 6 -1.4106 -4.0738 -2.0829 14 6 -1.8791 -5.2982 -1.7468 15 7 -2.9359 -6.0585 -2.4511 16 8 -3.2957 -7.2469 -2.0124 17 8 -3.5165 -5.5463 -3.5166 18 7 -1.1990 -5.6981 -0.6438 19 1 -1.3316 -6.5426 -0.1854 20 7 -0.3495 -4.7985 -0.2977 21 6 1.7008 -3.5598 0.7294 22 6 2.7814 -3.3488 1.7917 23 6 3.0803 -4.1976 0.5534 24 1 -0.4850 0.8367 0.0733 25 1 -1.7275 -3.4577 -2.9114 26 1 0.8698 -4.2190 0.9807 27 1 3.2437 -2.3634 1.8507 28 1 2.6616 -3.8695 2.7418 29 1 3.1571 -5.2764 0.6894 30 1 3.7393 -3.7711 -0.2028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285240777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:40 Heat of formation + Delta-G solvation = 114.163494 kcal Electronic energy + Delta-G solvation = -19985.107145 eV Core-core repulsion = 16595.866095 eV Total energy + Delta-G solvation = -3389.241049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.40616 -40.43132 -40.01958 -37.78148 -35.89363 -34.90214 -33.63858 -33.19266 -32.77848 -28.19439 -27.26388 -24.77329 -23.15185 -23.11011 -22.61150 -21.69755 -20.64316 -19.34428 -18.75302 -18.08051 -17.96993 -17.31595 -16.62485 -16.39560 -15.98089 -15.60594 -15.32839 -14.89441 -14.72789 -13.87792 -13.28171 -13.01174 -12.87890 -12.77303 -12.67804 -12.40223 -12.23484 -12.14761 -12.04741 -11.62057 -11.20325 -11.06064 -10.90152 -10.79631 -10.30080 -9.16835 -8.30276 -5.90427 -2.01438 -0.72811 0.18196 0.57261 1.34445 1.43088 1.48054 1.52258 2.28519 2.60825 2.75312 2.95730 3.03675 3.29670 3.38938 3.65230 4.06573 4.07530 4.26167 4.34466 4.52317 4.62952 4.89555 5.06488 5.14686 5.29743 5.34111 5.46507 5.51180 6.06913 6.19420 6.75802 7.21019 7.55206 8.31251 8.71933 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.006042 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.405845 B = 4632.824542 C = 5507.563466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.020 3.980 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.253 1.253 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.393 5.393 10 C 0.510 3.490 11 O -0.570 6.570 12 C 0.015 3.985 13 C -0.073 4.073 14 C 0.093 3.907 15 N 0.018 4.982 16 O -0.150 6.150 17 O -0.175 6.175 18 N -0.329 5.329 19 H 0.476 0.524 20 N -0.172 5.172 21 C 0.026 3.974 22 C -0.166 4.166 23 C -0.182 4.182 24 H 0.274 0.726 25 H 0.189 0.811 26 H 0.147 0.853 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 -10.911 3.123 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.177 1.177 6 H -0.200 1.200 7 C -0.520 4.520 8 H 0.105 0.895 9 N -0.108 5.108 10 C 0.298 3.702 11 O -0.450 6.450 12 C -0.142 4.142 13 C -0.105 4.105 14 C -0.117 4.117 15 N 0.495 4.505 16 O -0.347 6.347 17 O -0.358 6.358 18 N -0.055 5.055 19 H 0.328 0.672 20 N -0.017 5.017 21 C -0.079 4.079 22 C -0.204 4.204 23 C -0.220 4.220 24 H 0.085 0.915 25 H 0.206 0.794 26 H 0.164 0.836 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.117 -10.356 3.786 11.082 hybrid contribution -0.702 0.585 -0.755 1.185 sum 0.415 -9.771 3.031 10.239 Atomic orbital electron populations 1.68945 1.09565 1.29613 1.37569 1.27822 0.95211 1.03104 0.93413 0.85198 0.78257 0.76519 0.79400 1.20780 1.17733 1.19976 1.19953 0.91318 0.82814 1.57933 0.89488 1.41617 1.31974 1.10425 1.26820 1.16900 0.85580 0.84436 0.83266 1.90570 1.70736 1.40503 1.43190 1.22513 1.00556 0.95942 0.95181 1.21734 0.94889 0.92576 1.01312 1.20694 0.98815 0.95133 0.97023 1.49318 0.99137 1.01368 1.00700 1.96278 1.68034 1.00684 1.69667 1.96375 1.55463 1.72832 1.11179 1.43779 1.24412 1.18615 1.18731 0.67207 1.74013 1.08451 0.98414 1.20784 1.22765 0.93959 0.92851 0.98310 1.23176 1.01902 1.01524 0.93758 1.23277 0.98795 0.99669 1.00298 0.91516 0.79357 0.83591 0.89429 0.86396 0.86226 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.04 11.17 23.26 0.26 -46.78 16 2 C 0.02 1.05 4.90 87.30 0.43 1.48 16 3 Si 0.98 41.97 29.65 68.60 2.03 44.01 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.39 -20.51 8.14 86.70 0.71 -19.81 16 8 H 0.09 4.39 7.21 -2.91 -0.02 4.37 16 9 N -0.39 -19.16 2.80 -611.86 -1.71 -20.88 16 10 C 0.51 25.83 6.80 86.70 0.59 26.42 16 11 O -0.57 -33.53 14.53 -3.68 -0.05 -33.59 16 12 C 0.01 0.59 6.88 42.41 0.29 0.88 16 13 C -0.07 -2.52 10.53 22.42 0.24 -2.29 16 14 C 0.09 2.66 8.25 127.86 1.05 3.71 16 15 N 0.02 0.52 4.98 -49.54 -0.25 0.27 16 16 O -0.15 -4.00 19.97 3.52 0.07 -3.93 16 17 O -0.17 -5.58 19.77 3.51 0.07 -5.51 16 18 N -0.33 -7.78 6.86 -49.69 -0.34 -8.12 16 19 H 0.48 6.94 8.96 -219.99 -1.97 4.96 16 20 N -0.17 -5.32 8.65 -48.22 -0.42 -5.73 16 21 C 0.03 0.98 5.62 44.99 0.25 1.23 16 22 C -0.17 -5.37 9.78 30.62 0.30 -5.07 16 23 C -0.18 -5.64 10.36 30.62 0.32 -5.32 16 24 H 0.27 14.73 8.27 -92.71 -0.77 13.96 16 25 H 0.19 6.38 8.06 -2.91 -0.02 6.36 16 26 H 0.15 5.02 5.11 -2.39 -0.01 5.01 16 27 H 0.09 3.20 6.70 -2.39 -0.02 3.18 16 28 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.84 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -67.40 279.70 3.09 -64.31 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.75 Total: 14.72 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.17 Total: 1.23 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.46 Total: -81.24 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: 0.09 Total: -43.02 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.40 3.09 -64.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.475 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds