Wall clock time and date at job start Mon Mar 30 2020 01:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47134 * 75.11749 * 3 2 1 5 5 N 1.46899 * 109.47224 * 179.86951 * 4 3 2 6 6 C 1.46897 * 111.00206 * 289.59543 * 5 4 3 7 7 C 1.50708 * 109.47297 * 160.32374 * 6 5 4 8 8 H 1.07991 * 119.99626 * 4.63915 * 7 6 5 9 9 C 1.37874 * 119.99749 * 184.63356 * 7 6 5 10 10 N 1.31511 * 120.00497 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47414 * 89.99903 * 11 9 7 13 13 H 1.48504 * 109.47363 * 210.00374 * 11 9 7 14 14 H 1.48500 * 109.47027 * 330.00038 * 11 9 7 15 15 C 1.46894 * 111.00455 * 165.63723 * 5 4 3 16 16 C 1.50696 * 109.47243 * 293.95812 * 15 5 4 17 17 O 1.34631 * 125.85277 * 270.32917 * 16 15 5 18 18 C 1.34276 * 109.53662 * 180.15483 * 17 16 15 19 19 C 1.34480 * 108.57297 * 359.55905 * 18 17 16 20 20 C 1.35028 * 125.85421 * 89.99770 * 16 15 5 21 21 S 1.76202 * 126.63738 * 0.02562 * 20 16 15 22 22 H 1.08994 * 109.47087 * 315.11679 * 3 2 1 23 23 H 1.08997 * 109.46887 * 195.11715 * 3 2 1 24 24 H 1.09001 * 109.47199 * 59.86935 * 4 3 2 25 25 H 1.09004 * 109.47123 * 299.86943 * 4 3 2 26 26 H 1.08991 * 109.47164 * 280.32671 * 6 5 4 27 27 H 1.09003 * 109.47070 * 40.32724 * 6 5 4 28 28 H 0.96999 * 120.00251 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.47523 * 173.95436 * 15 5 4 30 30 H 1.08999 * 109.47232 * 53.95725 * 15 5 4 31 31 H 1.07998 * 125.70838 * 179.82882 * 18 17 16 32 32 H 1.07998 * 126.56090 * 180.26464 * 19 18 17 33 33 H 1.34499 * 102.99963 * 269.97287 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3696 -1.3941 5 7 4.5872 -0.3659 -1.3949 6 6 5.1103 1.0023 -1.2836 7 6 6.5398 0.9565 -0.8084 8 1 7.0361 0.0059 -0.6809 9 6 7.2137 2.1282 -0.5366 10 7 6.6090 3.2857 -0.6914 11 14 8.9857 2.0715 0.0517 12 1 9.8976 2.1099 -1.1196 13 1 9.2544 3.2407 0.9269 14 1 9.2138 0.8186 0.8156 15 6 5.1147 -1.0354 -2.5912 16 6 4.7599 -2.4993 -2.5452 17 8 5.5031 -3.4737 -1.9877 18 6 4.8802 -4.6540 -2.1358 19 6 3.7203 -4.4478 -2.7845 20 6 3.6392 -3.0577 -3.0506 21 16 2.3294 -2.2206 -3.8803 22 1 2.9717 -0.7273 0.7251 23 1 2.9709 0.9929 0.2680 24 1 2.7526 0.3571 -2.1196 25 1 2.7572 -1.3628 -1.6611 26 1 5.0667 1.4883 -2.2581 27 1 4.5081 1.5645 -0.5699 28 1 7.0831 4.1100 -0.4998 29 1 6.1987 -0.9251 -2.6212 30 1 4.6788 -0.5838 -3.4824 31 1 5.2470 -5.6083 -1.7879 32 1 2.9905 -5.1977 -3.0516 33 1 1.4958 -1.8934 -2.8768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237185385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:47 Heat of formation + Delta-G solvation = 53.095802 kcal Electronic energy + Delta-G solvation = -17762.516244 eV Core-core repulsion = 14916.920315 eV Total energy + Delta-G solvation = -2845.595929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47240 -37.72602 -36.21864 -33.07879 -32.71197 -31.72821 -29.92283 -27.03132 -25.31045 -23.34223 -21.92117 -21.09598 -20.24498 -17.81653 -17.61248 -16.71764 -16.40459 -16.00194 -15.19641 -14.78705 -14.51276 -14.22124 -13.92498 -13.56516 -13.36998 -12.95335 -12.70229 -12.61405 -12.23903 -12.16808 -11.69896 -11.31073 -11.21892 -11.02777 -10.88769 -10.74142 -10.41857 -9.94630 -9.65068 -9.40035 -8.54163 -8.44575 -8.06225 -7.56752 -6.12764 -4.14940 1.44759 1.84948 2.32745 2.84100 2.91132 2.97667 3.23505 3.27423 3.34800 3.38469 4.05718 4.37096 4.71609 4.91306 5.01037 5.18660 5.24647 5.32951 5.43344 5.67367 5.73270 5.79133 5.94269 6.04754 6.15653 6.25122 6.38267 6.87560 7.09899 7.15945 7.62950 7.66381 7.79600 7.96372 8.31087 8.92380 9.50396 10.97477 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.006655 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.673537 B = 4206.337280 C = 5370.006951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.217 3.783 3 C -0.030 4.030 4 C 0.052 3.948 5 N -0.526 5.526 6 C 0.189 3.811 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.125 3.875 16 C 0.092 3.908 17 O -0.157 6.157 18 C -0.047 4.047 19 C -0.182 4.182 20 C -0.216 4.216 21 S -0.085 6.085 22 H 0.115 0.885 23 H 0.122 0.878 24 H 0.043 0.957 25 H 0.059 0.941 26 H -0.001 1.001 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.203 0.797 32 H 0.151 0.849 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -12.010 -3.543 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.101 4.101 3 C -0.071 4.071 4 C -0.079 4.079 5 N -0.251 5.251 6 C 0.065 3.935 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.002 4.002 16 C 0.036 3.964 17 O -0.051 6.051 18 C -0.116 4.116 19 C -0.204 4.204 20 C -0.331 4.331 21 S 0.070 5.930 22 H 0.133 0.867 23 H 0.139 0.861 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.220 0.780 32 H 0.168 0.832 33 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.407 -11.624 -3.586 13.312 hybrid contribution 1.062 0.017 0.984 1.448 sum -4.346 -11.607 -2.602 12.664 Atomic orbital electron populations 1.81166 1.13123 1.09935 1.09098 1.29473 0.95500 0.92394 0.92705 1.19420 0.80134 1.06845 1.00652 1.22267 0.91117 1.00286 0.94232 1.62110 1.03657 1.22984 1.36346 1.19918 0.96132 0.80856 0.96586 1.21119 0.96336 0.92824 1.44682 0.91616 1.24954 0.98442 0.95338 0.95587 1.69933 1.37163 0.97442 1.49049 0.86511 0.84628 0.77665 0.78729 1.20681 1.21300 1.19721 1.20691 1.03512 0.82350 0.93677 1.23366 0.89377 0.91482 0.92175 1.84234 1.44659 1.15552 1.60647 1.23957 0.94438 0.88579 1.04614 1.21884 0.99382 0.95352 1.03741 1.21305 1.00350 0.96446 1.14963 1.85615 1.21064 1.73171 1.13107 0.86732 0.86053 0.93850 0.92249 0.98286 0.93921 0.92761 0.87188 0.90676 0.77999 0.83151 0.96785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.82 18.54 42.15 0.78 -7.04 16 2 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 3 C -0.03 -0.43 5.75 -29.52 -0.17 -0.60 16 4 C 0.05 0.81 4.11 -3.83 -0.02 0.79 16 5 N -0.53 -9.62 4.38 -237.52 -1.04 -10.66 16 6 C 0.19 4.21 4.60 -4.97 -0.02 4.19 16 7 C -0.51 -12.83 8.61 -34.44 -0.30 -13.13 16 8 H 0.07 1.65 7.66 -52.49 -0.40 1.25 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -24.61 13.29 55.43 0.74 -23.87 16 11 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 C 0.13 2.12 5.12 -4.98 -0.03 2.09 16 16 C 0.09 1.44 6.29 -35.45 -0.22 1.21 16 17 O -0.16 -2.37 10.66 4.88 0.05 -2.32 16 18 C -0.05 -0.55 12.08 29.40 0.36 -0.19 16 19 C -0.18 -2.24 10.90 -39.56 -0.43 -2.67 16 20 C -0.22 -3.12 5.43 -39.38 -0.21 -3.33 16 21 S -0.09 -1.17 24.17 -107.50 -2.60 -3.77 16 22 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 23 H 0.12 1.80 6.45 -51.93 -0.33 1.46 16 24 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.06 0.90 3.51 -51.93 -0.18 0.72 16 26 H 0.00 -0.02 8.00 -51.93 -0.42 -0.43 16 27 H 0.04 0.99 6.14 -51.93 -0.32 0.67 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.11 1.98 7.32 -51.93 -0.38 1.60 16 30 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 31 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.07 0.95 7.68 97.61 0.75 1.70 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -28.43 300.86 -6.53 -34.96 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -2.51 Total: 0.13 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.46 Total: -7.22 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.48 Total: -41.57 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.05 Total: -2.32 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.60 Total: -3.77 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.43 -6.53 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237185385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds