Wall clock time and date at job start Mon Mar 30 2020 00:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99701 * 2 1 4 4 C 1.38488 * 119.95231 * 359.97438 * 3 2 1 5 5 C 1.39597 * 119.89790 * 180.02562 * 4 3 2 6 6 C 1.47693 * 120.10176 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99758 * 0.02562 * 6 5 4 8 8 O 1.34729 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.34854 * 116.99795 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00010 * 0.02562 * 9 8 6 11 11 C 1.38812 * 119.99705 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00201 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99854 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47183 * 59.99979 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47086 * 300.00269 * 13 11 9 17 17 C 1.39603 * 119.79838 * 0.25660 * 5 4 3 18 18 C 1.38489 * 119.89417 * 359.48703 * 17 5 4 19 19 O 1.35912 * 119.94814 * 180.27446 * 18 17 5 20 20 C 1.42897 * 116.99900 * 0.24158 * 19 18 17 21 21 C 1.38746 * 119.94421 * 180.02562 * 3 2 1 22 22 C 1.50695 * 119.90168 * 0.02562 * 21 3 2 23 23 H 1.08997 * 109.47179 * 60.00244 * 1 2 3 24 24 H 1.08996 * 109.47381 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47758 * 300.00025 * 1 2 3 26 26 H 1.07999 * 120.04553 * 0.04380 * 4 3 2 27 27 H 0.97005 * 120.00019 * 179.97438 * 12 11 9 28 28 H 1.07998 * 120.05740 * 179.72156 * 17 5 4 29 29 H 1.09001 * 109.46989 * 299.99653 * 20 19 18 30 30 H 1.08995 * 109.47863 * 59.99701 * 20 19 18 31 31 H 1.08999 * 109.46943 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.47325 * 89.99723 * 22 21 3 33 33 H 1.09008 * 109.47517 * 210.00212 * 22 21 3 34 34 H 1.09003 * 109.47095 * 330.00083 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2907 2.3718 -0.0005 5 6 1.9255 3.6150 -0.0011 6 6 1.1245 4.8558 -0.0022 7 8 -0.0891 4.7954 -0.0022 8 8 1.7393 6.0546 -0.0033 9 6 0.9496 7.1477 -0.0037 10 1 -0.1248 7.0377 -0.0029 11 6 1.5176 8.4143 -0.0043 12 7 2.8249 8.5482 -0.0048 13 14 0.4237 9.9285 -0.0057 14 1 -0.4342 9.9205 1.2065 15 1 1.2686 11.1496 -0.0054 16 1 -0.4332 9.9190 -1.2185 17 6 3.3199 3.6819 -0.0065 18 6 4.0670 2.5158 -0.0006 19 8 5.4246 2.5797 -0.0002 20 6 6.0127 3.8820 -0.0007 21 6 3.4316 1.2823 -0.0005 22 6 4.2490 0.0163 -0.0017 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2122 2.3152 -0.0002 27 1 3.2218 9.4333 -0.0056 28 1 3.8154 4.6415 -0.0115 29 1 5.6943 4.4241 -0.8912 30 1 5.6937 4.4252 0.8887 31 1 7.0988 3.7901 0.0001 32 1 4.4456 -0.2883 -1.0296 33 1 5.1940 0.1934 0.5119 34 1 3.6986 -0.7720 0.5118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003388766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:26 Heat of formation + Delta-G solvation = -130.487638 kcal Electronic energy + Delta-G solvation = -20027.479098 eV Core-core repulsion = 16698.876771 eV Total energy + Delta-G solvation = -3328.602326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44433 -38.88917 -38.81706 -36.15767 -35.11120 -32.67472 -32.21280 -29.34856 -27.66163 -27.50842 -26.76344 -25.19808 -22.37646 -21.56240 -20.39095 -18.24163 -17.80712 -16.73631 -16.20169 -15.90717 -15.86603 -15.33844 -15.30544 -14.67922 -14.50921 -14.39880 -14.08178 -13.22342 -13.19756 -12.61037 -12.31033 -12.10921 -11.92629 -11.73051 -11.57581 -11.35393 -11.29665 -11.16689 -10.77621 -10.64972 -10.52570 -10.24157 -9.93629 -9.15651 -8.68032 -8.06287 -7.89570 -6.54333 -4.16289 1.17473 1.67704 3.03254 3.09534 3.13185 3.17134 3.42593 3.79600 3.85746 4.26410 4.42102 5.07357 5.09393 5.13106 5.15079 5.25324 5.25771 5.45583 5.47417 5.48409 5.63872 5.76013 5.82473 5.87533 5.92424 5.97059 6.37251 6.54735 6.62569 6.68192 6.94054 7.28987 7.42155 7.57279 7.83682 8.61277 8.94518 9.74316 10.63223 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.005624 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.468406 B = 4977.180854 C = 6224.900045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.147 3.853 4 C -0.191 4.191 5 C -0.015 4.015 6 C 0.429 3.571 7 O -0.551 6.551 8 O -0.202 6.202 9 C -0.375 4.375 10 H 0.098 0.902 11 C 0.042 3.958 12 N -0.858 5.858 13 Si 0.947 3.053 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.268 1.268 17 C -0.191 4.191 18 C 0.149 3.851 19 O -0.314 6.314 20 C 0.024 3.976 21 C -0.141 4.141 22 C -0.091 4.091 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.141 0.859 27 H 0.272 0.728 28 H 0.149 0.851 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -12.482 0.018 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.102 3.898 4 C -0.210 4.210 5 C -0.016 4.016 6 C 0.278 3.722 7 O -0.450 6.450 8 O -0.108 6.108 9 C -0.451 4.451 10 H 0.116 0.884 11 C -0.163 4.163 12 N -0.494 5.494 13 Si 0.771 3.229 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.193 1.193 17 C -0.211 4.211 18 C 0.104 3.896 19 O -0.227 6.227 20 C -0.070 4.070 21 C -0.143 4.143 22 C -0.147 4.147 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.575 -12.631 0.018 13.127 hybrid contribution -0.841 1.328 -0.007 1.572 sum 2.733 -11.304 0.012 11.629 Atomic orbital electron populations 1.23078 0.78240 1.03568 1.02042 1.86000 1.21375 1.26308 1.88908 1.18122 0.90697 0.83994 0.97019 1.21137 1.00818 0.90409 1.08668 1.18870 0.92338 0.91444 0.98997 1.20675 0.86384 0.84802 0.80385 1.90615 1.15044 1.87783 1.51580 1.83883 1.39751 1.12693 1.74484 1.21299 0.91184 0.81153 1.51418 0.88430 1.25393 0.96552 0.98322 0.96000 1.69956 1.09629 1.24621 1.45177 0.85685 0.78927 0.78768 0.79508 1.19330 1.20237 1.19324 1.21593 0.93847 0.98461 1.07150 1.18260 0.82572 0.92444 0.96336 1.85981 1.16751 1.31301 1.88692 1.23126 0.98389 0.82929 1.02601 1.18345 0.90474 0.94111 1.11332 1.20381 0.98804 0.93596 1.01954 0.92366 0.88362 0.92371 0.84157 0.91774 0.83323 0.92009 0.92026 0.88366 0.91827 0.91434 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.47 9.52 -19.46 -0.19 -4.65 16 3 C 0.15 2.44 6.65 -39.30 -0.26 2.18 16 4 C -0.19 -3.58 8.58 -38.98 -0.33 -3.92 16 5 C -0.01 -0.32 5.87 -105.02 -0.62 -0.94 16 6 C 0.43 11.21 7.84 34.59 0.27 11.48 16 7 O -0.55 -15.29 15.59 -19.27 -0.30 -15.59 16 8 O -0.20 -5.80 8.99 -21.63 -0.19 -5.99 16 9 C -0.37 -10.99 9.65 30.94 0.30 -10.69 16 10 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 11 C 0.04 1.17 5.50 -17.52 -0.10 1.07 16 12 N -0.86 -24.30 13.67 55.49 0.76 -23.54 16 13 Si 0.95 20.83 29.55 -169.99 -5.02 15.81 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 C -0.19 -3.75 8.60 -38.98 -0.34 -4.09 16 18 C 0.15 2.57 6.65 -39.30 -0.26 2.31 16 19 O -0.31 -4.81 9.52 -19.46 -0.19 -4.99 16 20 C 0.02 0.32 9.81 101.05 0.99 1.31 16 21 C -0.14 -2.30 5.91 -104.25 -0.62 -2.91 16 22 C -0.09 -1.19 9.56 36.00 0.34 -0.85 16 23 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 26 H 0.14 2.54 5.87 -52.49 -0.31 2.23 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.15 3.01 5.83 -52.49 -0.31 2.70 16 29 H 0.06 0.82 7.64 -51.93 -0.40 0.43 16 30 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.84 7.52 -51.92 -0.39 0.45 16 34 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -32.81 299.51 -3.99 -36.80 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.75 Total: 1.42 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 0.37 Total: -3.77 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.76 Total: -23.54 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.87 Total: -31.23 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.81 -3.99 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003388766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.685 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds