Wall clock time and date at job start Mon Mar 30 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35904 * 116.99533 * 2 1 4 4 C 1.38809 * 120.02131 * 359.72396 * 3 2 1 5 5 C 1.38171 * 120.08767 * 179.69749 * 4 3 2 6 6 C 1.38168 * 120.12084 * 0.60294 * 5 4 3 7 7 C 1.38895 * 120.04086 * 359.67672 * 6 5 4 8 8 N 1.39889 * 120.04489 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99977 * 221.88489 * 8 7 6 10 10 S 1.71205 * 119.99735 * 5.53537 * 9 8 7 11 11 N 1.34773 * 120.00250 * 185.53319 * 9 8 7 12 12 C 1.46496 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47156 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00166 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00217 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99734 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00185 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46949 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47028 * 120.00114 * 17 15 13 20 20 H 1.48497 * 109.47097 * 240.00060 * 17 15 13 21 21 C 1.38578 * 120.01941 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46915 * 299.99652 * 1 2 3 24 24 H 1.08994 * 109.47039 * 60.00436 * 1 2 3 25 25 H 1.08002 * 119.95465 * 0.02562 * 4 3 2 26 26 H 1.07991 * 119.94170 * 180.29972 * 5 4 3 27 27 H 1.07998 * 119.97837 * 179.69731 * 6 5 4 28 28 H 0.97000 * 119.99854 * 41.88515 * 8 7 6 29 29 H 0.96999 * 119.99915 * 0.02562 * 11 9 8 30 30 H 1.08996 * 109.47474 * 299.99931 * 12 11 9 31 31 H 1.09000 * 109.47022 * 60.00247 * 12 11 9 32 32 H 0.96999 * 119.99895 * 180.02562 * 16 15 13 33 33 H 1.08004 * 120.06009 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2903 2.3753 -0.0058 5 6 1.9160 3.6072 0.0005 6 6 3.2956 3.6842 0.0000 7 6 4.0568 2.5224 0.0000 8 7 5.4535 2.6003 0.0000 9 6 6.1747 1.7702 -0.7793 10 16 5.3819 0.7188 -1.8734 11 7 7.5200 1.7678 -0.6973 12 6 8.3039 0.8652 -1.5440 13 6 9.7713 1.0587 -1.2609 14 1 10.0884 1.7815 -0.5236 15 6 10.7092 0.3123 -1.9422 16 7 10.3232 -0.5682 -2.8396 17 14 12.5282 0.5517 -1.5907 18 1 12.6976 1.5935 -0.5461 19 1 13.1126 -0.7272 -1.1130 20 1 13.2204 0.9787 -2.8332 21 6 3.4298 1.2841 -0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.2118 2.3183 -0.0099 26 1 1.3258 4.5116 0.0009 27 1 3.7822 4.6483 0.0000 28 1 5.9029 3.2517 0.5609 29 1 7.9691 2.3633 -0.0772 30 1 8.0253 -0.1667 -1.3305 31 1 8.1044 1.0859 -2.5926 32 1 10.9830 -1.0935 -3.3187 33 1 4.0194 0.3791 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007557244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:33 Heat of formation + Delta-G solvation = 9.442213 kcal Electronic energy + Delta-G solvation = -17049.490627 eV Core-core repulsion = 14202.001737 eV Total energy + Delta-G solvation = -2847.488891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25757 -38.78447 -37.01166 -34.72443 -32.68014 -30.60566 -29.44885 -27.42365 -27.09144 -24.05541 -22.84843 -22.08456 -21.69333 -18.66950 -18.34543 -16.39884 -16.24255 -16.13287 -15.82079 -15.63187 -14.99427 -14.77267 -14.42272 -13.69004 -13.43184 -13.40815 -12.75631 -12.26776 -12.23333 -11.94280 -11.67234 -11.12945 -11.05465 -10.93247 -10.88345 -10.53304 -10.39065 -9.58201 -9.49492 -8.69675 -8.29567 -7.97442 -7.17127 -6.47459 -6.26244 -4.37757 1.19519 1.57543 2.08557 2.51074 3.02241 3.17182 3.24330 3.26755 3.44749 3.87911 4.10011 4.30231 4.83138 5.03714 5.08424 5.08647 5.11446 5.20240 5.40936 5.42951 5.61737 5.85769 6.28878 6.30613 6.43547 6.52153 6.71426 6.86578 7.28079 7.33588 7.38781 7.51887 7.56656 7.79628 8.11939 8.66389 9.28241 10.81695 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039853 B = 0.003940 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.406010 B = 7104.022434 C = 7589.400214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.132 3.868 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.168 4.168 7 C 0.185 3.815 8 N -0.652 5.652 9 C 0.543 3.457 10 S -0.637 6.637 11 N -0.642 5.642 12 C 0.248 3.752 13 C -0.558 4.558 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.874 5.874 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.104 4.104 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.403 0.597 29 H 0.391 0.609 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 8.146 9.073 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.085 3.915 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.190 4.190 7 C 0.090 3.910 8 N -0.281 5.281 9 C 0.183 3.817 10 S -0.509 6.509 11 N -0.262 5.262 12 C 0.129 3.871 13 C -0.596 4.596 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.510 5.510 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.127 4.127 22 H 0.115 0.885 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.241 0.759 29 H 0.226 0.774 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.010 6.946 8.055 19.221 hybrid contribution 1.640 1.402 1.080 2.413 sum -14.369 8.348 9.135 18.964 Atomic orbital electron populations 1.23011 0.78904 1.03683 1.01013 1.86123 1.20822 1.26806 1.88752 1.18648 0.91627 0.84093 0.97109 1.21171 0.99754 0.92391 1.09965 1.20536 0.93498 0.96925 0.98865 1.20750 0.93988 0.96669 1.07554 1.16943 0.80621 0.93334 1.00072 1.42171 1.04971 1.37172 1.43798 1.22413 0.85714 0.87008 0.86571 1.93298 1.70679 1.45333 1.41558 1.46076 1.02307 1.38805 1.39029 1.19753 0.88236 0.88833 0.90324 1.21159 0.89986 1.24013 1.24489 0.91910 1.24906 0.99655 0.94528 0.94494 1.69991 1.34671 1.22640 1.23701 0.86326 0.83909 0.78188 0.78279 1.19718 1.20598 1.20612 1.20597 0.91768 0.98871 1.01499 0.88484 0.92969 0.92774 0.85747 0.85708 0.85952 0.75912 0.77372 0.92857 0.92944 0.92171 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.45 10.50 -19.44 -0.20 -4.65 16 3 C 0.13 1.94 6.68 -39.25 -0.26 1.68 16 4 C -0.21 -2.52 9.04 -39.39 -0.36 -2.87 16 5 C -0.08 -0.87 10.03 -39.63 -0.40 -1.26 16 6 C -0.17 -2.05 9.97 -39.36 -0.39 -2.44 16 7 C 0.18 2.75 5.91 -83.73 -0.49 2.26 16 8 N -0.65 -9.54 5.33 -11.42 -0.06 -9.60 16 9 C 0.54 10.43 7.74 -86.92 -0.67 9.76 16 10 S -0.64 -15.07 25.06 -107.50 -2.69 -17.76 16 11 N -0.64 -12.54 5.55 -63.22 -0.35 -12.89 16 12 C 0.25 6.21 4.88 -5.19 -0.03 6.18 16 13 C -0.56 -14.44 9.28 -34.44 -0.32 -14.76 16 14 H 0.06 1.51 7.60 -52.49 -0.40 1.12 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 16 N -0.87 -25.04 13.29 55.43 0.74 -24.30 16 17 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 C -0.10 -1.74 7.79 -39.25 -0.31 -2.04 16 22 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 24 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 25 H 0.12 1.13 6.29 -52.49 -0.33 0.80 16 26 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.40 4.33 8.84 -40.82 -0.36 3.97 16 29 H 0.39 6.33 8.34 -40.82 -0.34 5.98 16 30 H 0.05 1.49 7.99 -51.93 -0.42 1.08 16 31 H 0.05 1.47 7.99 -51.93 -0.41 1.06 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.15 2.95 6.27 -49.86 -0.31 2.64 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -32.79 298.38 -9.20 -41.99 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.77 Total: 7.98 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.33 Total: -0.48 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.32 Total: -46.79 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -15.07 SS G_CDS: -2.69 Total: -17.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.79 -9.20 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007557244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.432 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds