Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35984 * 116.99581 * 2 1 4 4 C 1.38722 * 119.98232 * 179.97438 * 3 2 1 5 5 C 1.38093 * 120.01523 * 180.27477 * 4 3 2 6 6 C 1.38854 * 119.98238 * 359.51967 * 5 4 3 7 7 N 1.40096 * 120.01104 * 180.22781 * 6 5 4 8 8 C 1.34769 * 120.00378 * 41.96031 * 7 6 5 9 9 S 1.71200 * 119.99815 * 5.52617 * 8 7 6 10 10 N 1.34781 * 120.00328 * 185.53027 * 8 7 6 11 11 C 1.46496 * 119.99829 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46907 * 180.02562 * 11 10 8 13 13 H 1.08009 * 119.99773 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00359 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99678 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00176 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46955 * 90.00122 * 16 14 12 18 18 H 1.48499 * 109.47090 * 210.00069 * 16 14 12 19 19 H 1.48499 * 109.47214 * 330.00503 * 16 14 12 20 20 C 1.38844 * 119.96728 * 0.48400 * 6 5 4 21 21 C 1.38098 * 119.98938 * 359.74414 * 20 6 5 22 22 H 1.09000 * 109.47624 * 300.00053 * 1 2 3 23 23 H 1.09001 * 109.47082 * 60.00346 * 1 2 3 24 24 H 1.09003 * 109.46575 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99085 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.00685 * 179.74338 * 5 4 3 27 27 H 0.96999 * 119.99814 * 221.95359 * 7 6 5 28 28 H 0.96996 * 119.99422 * 359.97438 * 10 8 7 29 29 H 1.09004 * 109.47305 * 299.99965 * 11 10 8 30 30 H 1.09002 * 109.47285 * 60.00634 * 11 10 8 31 31 H 0.96997 * 119.99622 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.00580 * 179.72783 * 20 6 5 33 33 H 1.07992 * 119.99956 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5140 0.0063 6 6 3.3031 3.6787 0.0014 7 7 3.9392 4.9270 0.0024 8 6 5.0217 5.1323 -0.7736 9 16 5.5355 3.9174 -1.8649 10 7 5.7000 6.2941 -0.6905 11 6 6.8770 6.5170 -1.5336 12 6 7.4475 7.8825 -1.2490 13 1 6.9802 8.5203 -0.5132 14 6 8.5666 8.3173 -1.9270 15 7 9.1359 7.5404 -2.8225 16 14 9.2732 10.0102 -1.5746 17 1 10.2772 9.9104 -0.4849 18 1 9.9237 10.5399 -2.8000 19 1 8.1806 10.9259 -1.1587 20 6 1.9166 3.6056 0.0010 21 6 1.2903 2.3748 0.0000 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 4.0194 0.3779 0.0005 26 1 5.1376 2.5701 0.0109 27 1 3.6003 5.6435 0.5616 28 1 5.4086 6.9825 -0.0724 29 1 7.6283 5.7574 -1.3170 30 1 6.5893 6.4547 -2.5831 31 1 9.9229 7.8464 -3.2998 32 1 1.3280 4.5111 0.0016 33 1 0.2119 2.3177 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038675054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = 7.947539 kcal Electronic energy + Delta-G solvation = -16907.195396 eV Core-core repulsion = 14059.641692 eV Total energy + Delta-G solvation = -2847.553705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28191 -38.87581 -37.01634 -34.57845 -32.64880 -31.10607 -29.22958 -27.74016 -26.77649 -23.87738 -23.03184 -22.26794 -21.56237 -18.40770 -18.26279 -17.66885 -16.32804 -15.93755 -15.77268 -15.41652 -14.82562 -14.59275 -14.17910 -13.72225 -13.60755 -13.29874 -12.79845 -12.68152 -12.23245 -12.03582 -11.87124 -11.15942 -11.07030 -10.90980 -10.79599 -10.55278 -10.39251 -9.61138 -9.26903 -8.95819 -8.56763 -7.75167 -7.18243 -6.53048 -6.27283 -4.38688 1.26427 1.46876 2.09075 2.52239 3.09119 3.16872 3.23309 3.25125 3.27743 3.86649 4.08683 4.29446 4.74673 4.90906 4.96702 4.99080 5.07707 5.27351 5.34435 5.45103 5.68737 5.95540 6.03972 6.31635 6.35952 6.60201 6.70991 6.88808 7.27489 7.32455 7.32800 7.45099 7.56239 7.78986 8.11581 8.65311 9.27304 10.80820 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.060946 B = 0.003509 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.310776 B = 7976.923515 C = 8279.178598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.121 3.879 4 C -0.143 4.143 5 C -0.031 4.031 6 C 0.111 3.889 7 N -0.649 5.649 8 C 0.546 3.454 9 S -0.646 6.646 10 N -0.643 5.643 11 C 0.249 3.751 12 C -0.559 4.559 13 H 0.062 0.938 14 C 0.070 3.930 15 N -0.874 5.874 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.093 4.093 21 C -0.206 4.206 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.401 0.599 28 H 0.391 0.609 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.123 0.877 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -8.089 9.108 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.164 4.164 5 C -0.054 4.054 6 C 0.017 3.983 7 N -0.278 5.278 8 C 0.185 3.815 9 S -0.516 6.516 10 N -0.264 5.264 11 C 0.130 3.870 12 C -0.597 4.597 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.510 5.510 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.114 4.114 21 C -0.226 4.226 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.238 0.762 28 H 0.226 0.774 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.773 -9.007 8.082 19.880 hybrid contribution -0.433 2.472 1.079 2.732 sum -16.206 -6.535 9.160 19.729 Atomic orbital electron populations 1.23008 0.78859 1.03610 1.01225 1.86084 1.21008 1.27185 1.88971 1.19042 0.92369 0.83881 0.97157 1.20238 0.90942 0.98321 1.06876 1.21291 1.01794 0.89742 0.92567 1.17260 0.90813 0.83996 1.06241 1.42155 1.28328 1.13578 1.43756 1.22389 0.82640 0.90153 0.86366 1.93237 1.78406 1.37879 1.42095 1.46063 1.28462 1.12589 1.39284 1.19731 0.79559 0.97372 0.90377 1.21127 1.13489 1.00429 1.24691 0.91980 1.24903 0.96148 0.98037 0.94474 1.69978 1.20778 1.36502 1.23765 0.86380 0.79233 0.83070 0.78033 1.20318 1.20773 1.19808 1.20599 0.92299 0.97678 1.00852 1.20829 0.99560 0.91610 1.10622 0.92850 0.92737 0.88538 0.84917 0.83078 0.76220 0.77390 0.92917 0.93004 0.92107 0.85877 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.74 10.50 -19.69 -0.21 -3.95 16 3 C 0.12 1.56 6.69 -39.23 -0.26 1.29 16 4 C -0.14 -2.01 9.98 -39.46 -0.39 -2.40 16 5 C -0.03 -0.48 7.85 -39.41 -0.31 -0.79 16 6 C 0.11 1.60 5.91 -83.63 -0.49 1.10 16 7 N -0.65 -9.27 5.33 -11.37 -0.06 -9.33 16 8 C 0.55 10.27 7.75 -86.92 -0.67 9.59 16 9 S -0.65 -14.89 25.07 -107.50 -2.69 -17.58 16 10 N -0.64 -12.43 5.55 -63.21 -0.35 -12.78 16 11 C 0.25 6.19 4.88 -5.19 -0.03 6.16 16 12 C -0.56 -14.40 9.28 -34.44 -0.32 -14.72 16 13 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 15 N -0.87 -24.95 13.29 55.43 0.74 -24.21 16 16 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.09 -1.12 9.96 -39.41 -0.39 -1.51 16 21 C -0.21 -2.35 9.03 -39.46 -0.36 -2.71 16 22 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 26 H 0.15 2.62 6.27 -50.08 -0.31 2.31 16 27 H 0.40 4.23 8.84 -40.82 -0.36 3.87 16 28 H 0.39 6.26 8.34 -40.82 -0.34 5.92 16 29 H 0.05 1.46 7.99 -51.93 -0.42 1.05 16 30 H 0.05 1.45 7.99 -51.93 -0.41 1.03 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -32.18 298.41 -9.21 -41.38 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.77 Total: 7.85 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.33 Total: -1.01 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.32 Total: -46.32 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.21 Total: -3.95 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: -14.89 SS G_CDS: -2.69 Total: -17.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.18 -9.21 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038675054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.331 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds