Wall clock time and date at job start Mon Mar 30 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46978 * 2 1 4 4 C 1.35783 * 116.99934 * 179.97438 * 3 2 1 5 5 C 1.38865 * 119.92120 * 0.02562 * 4 3 2 6 6 C 1.37760 * 120.15758 * 179.97438 * 5 4 3 7 7 C 1.39800 * 119.99493 * 0.02562 * 6 5 4 8 8 C 1.47416 * 120.08007 * 180.02562 * 7 6 5 9 9 O 1.21545 * 120.00345 * 179.97438 * 8 7 6 10 10 O 1.34776 * 120.00006 * 0.02562 * 8 7 6 11 11 C 1.34858 * 116.99865 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00377 * 0.02562 * 11 10 8 13 13 C 1.38805 * 119.99534 * 179.97438 * 11 10 8 14 14 N 1.31425 * 119.99529 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00076 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46660 * 90.00328 * 15 13 11 17 17 H 1.48497 * 109.47031 * 210.00050 * 15 13 11 18 18 H 1.48499 * 109.46904 * 330.00256 * 15 13 11 19 19 C 1.39830 * 119.84247 * 359.72125 * 7 6 5 20 20 C 1.38106 * 119.83820 * 0.53394 * 19 7 6 21 21 O 1.36001 * 119.99369 * 179.76807 * 20 19 7 22 22 C 1.42903 * 117.00304 * 359.72227 * 21 20 19 23 23 H 1.09008 * 109.47071 * 300.00025 * 1 2 3 24 24 H 1.08998 * 109.47238 * 60.00178 * 1 2 3 25 25 H 1.08997 * 109.46590 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47143 * 240.00057 * 2 1 3 27 27 H 1.08998 * 109.47238 * 119.99822 * 2 1 3 28 28 H 1.07992 * 119.92061 * 0.02562 * 5 4 3 29 29 H 1.07999 * 120.00590 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99179 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.07718 * 180.27363 * 19 7 6 32 32 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 33 33 H 1.09001 * 109.46938 * 59.99841 * 22 21 20 34 34 H 1.09004 * 109.46926 * 299.99962 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3525 1.5253 0.0005 5 6 4.1969 0.4228 0.0005 6 6 5.5633 0.5977 0.0005 7 6 6.1029 1.8874 0.0011 8 6 7.5648 2.0767 0.0006 9 8 8.0324 3.1986 0.0006 10 8 8.3830 1.0057 -0.0010 11 6 9.7095 1.2487 -0.0020 12 1 10.0722 2.2659 -0.0011 13 6 10.6087 0.1913 -0.0031 14 7 11.9014 0.4281 -0.0035 15 14 9.9813 -1.5683 -0.0040 16 1 9.8146 -2.0335 -1.4043 17 1 10.9575 -2.4422 0.6950 18 1 8.6733 -1.6277 0.6966 19 6 5.2525 2.9974 -0.0042 20 6 3.8837 2.8144 0.0011 21 8 3.0537 3.8918 0.0007 22 6 3.6663 5.1828 0.0008 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7814 -0.5739 -0.0003 29 1 6.2178 -0.2614 0.0001 30 1 12.5297 -0.3109 -0.0039 31 1 5.6653 3.9954 -0.0083 32 1 2.8937 5.9517 0.0000 33 1 4.2866 5.2906 -0.8890 34 1 4.2860 5.2908 0.8910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057651832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:09 Heat of formation + Delta-G solvation = -126.086750 kcal Electronic energy + Delta-G solvation = -19710.723131 eV Core-core repulsion = 16382.311642 eV Total energy + Delta-G solvation = -3328.411490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56768 -39.13648 -38.53538 -36.66449 -35.26549 -32.39453 -32.07448 -30.28646 -29.74844 -27.39202 -25.62570 -24.07459 -23.01307 -21.54138 -20.19450 -18.61730 -18.02085 -17.57520 -16.45099 -16.34349 -15.95908 -15.49299 -15.09492 -14.71415 -14.70147 -14.30293 -14.02959 -13.34755 -13.17099 -12.85620 -12.62513 -12.41761 -12.13190 -12.11728 -11.93238 -11.40073 -11.32548 -11.01323 -10.99429 -10.80830 -10.50053 -10.40431 -9.75658 -9.27257 -8.74195 -8.68158 -7.77407 -6.44011 -4.15186 1.06879 1.45211 3.08163 3.12085 3.20053 3.28324 3.29871 3.33856 4.06537 4.15337 4.19765 4.71228 4.73585 4.91328 5.04019 5.06230 5.08941 5.12265 5.23598 5.36168 5.37110 5.49951 5.55640 5.57892 5.71160 5.75697 5.81805 6.28645 6.47596 6.64097 6.72257 7.04273 7.56987 7.67621 7.98024 8.57805 8.93849 9.62951 10.63973 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.005168 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.353608 B = 5416.929307 C = 6622.533229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.304 6.304 4 C 0.116 3.884 5 C -0.185 4.185 6 C -0.070 4.070 7 C -0.087 4.087 8 C 0.448 3.552 9 O -0.539 6.539 10 O -0.242 6.242 11 C -0.374 4.374 12 H 0.111 0.889 13 C 0.066 3.934 14 N -0.868 5.868 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.258 1.258 19 C -0.121 4.121 20 C 0.086 3.914 21 O -0.308 6.308 22 C 0.024 3.976 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.281 0.719 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -1.184 0.017 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.218 6.218 4 C 0.070 3.930 5 C -0.204 4.204 6 C -0.088 4.088 7 C -0.089 4.089 8 C 0.296 3.704 9 O -0.435 6.435 10 O -0.150 6.150 11 C -0.450 4.450 12 H 0.129 0.871 13 C -0.139 4.139 14 N -0.507 5.507 15 Si 0.729 3.271 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.182 1.182 19 C -0.140 4.140 20 C 0.041 3.959 21 O -0.222 6.222 22 C -0.071 4.071 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.166 0.834 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.749 -0.855 0.019 20.767 hybrid contribution 0.394 -0.834 -0.011 0.923 sum -20.355 -1.689 0.008 20.425 Atomic orbital electron populations 1.21757 0.92831 1.02646 1.03520 1.22812 0.95838 0.82263 1.01524 1.86104 1.18264 1.28796 1.88661 1.18367 0.82894 0.91108 1.00666 1.20995 0.93688 0.97417 1.08288 1.21257 0.94263 0.97133 0.96184 1.19032 0.91011 0.93332 1.05542 1.20334 0.86669 0.83613 0.79772 1.90668 1.77254 1.25250 1.50355 1.83535 1.19559 1.35361 1.76568 1.20723 0.75866 0.97364 1.51020 0.87111 1.24576 0.94121 0.99663 0.95527 1.69597 1.00757 1.33613 1.46721 0.86226 0.79507 0.82279 0.79046 1.19684 1.20616 1.18238 1.21116 0.90272 1.00358 1.02212 1.17947 0.88468 0.85440 1.04030 1.86131 1.33590 1.13007 1.89492 1.23088 0.99789 0.82392 1.01839 0.91555 0.91549 0.90492 0.91938 0.91941 0.84411 0.84063 0.90860 0.83392 0.88335 0.92460 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.30 -4.16 9.90 -33.72 -0.33 -4.49 16 4 C 0.12 1.74 6.71 -38.91 -0.26 1.48 16 5 C -0.19 -2.62 9.01 -39.52 -0.36 -2.98 16 6 C -0.07 -1.18 9.61 -39.17 -0.38 -1.56 16 7 C -0.09 -1.73 5.87 -104.98 -0.62 -2.34 16 8 C 0.45 11.09 7.83 34.47 0.27 11.36 16 9 O -0.54 -14.70 15.59 -19.30 -0.30 -15.00 16 10 O -0.24 -6.45 7.81 -21.77 -0.17 -6.62 16 11 C -0.37 -11.13 10.11 30.94 0.31 -10.82 16 12 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 13 C 0.07 1.86 5.50 -17.52 -0.10 1.77 16 14 N -0.87 -25.46 13.96 55.49 0.77 -24.68 16 15 Si 0.90 21.01 28.62 -169.99 -4.86 16.14 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.12 -2.11 8.58 -39.03 -0.33 -2.44 16 20 C 0.09 1.38 6.69 -39.19 -0.26 1.12 16 21 O -0.31 -4.56 10.28 -34.41 -0.35 -4.92 16 22 C 0.02 0.27 9.81 101.05 0.99 1.26 16 23 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 27 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 28 H 0.14 1.50 6.27 -52.49 -0.33 1.17 16 29 H 0.14 2.37 7.60 -52.49 -0.40 1.97 16 30 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.15 2.51 5.87 -52.49 -0.31 2.20 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -33.59 301.25 -4.68 -38.27 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.82 Total: -0.05 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.14 Total: -3.19 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.77 Total: -24.68 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.16 Total: -31.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.59 -4.68 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057651832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.821 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds