Wall clock time and date at job start Mon Mar 30 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46978 * 2 1 4 4 C 1.35783 * 116.99934 * 179.97438 * 3 2 1 5 5 C 1.38865 * 119.92120 * 0.02562 * 4 3 2 6 6 C 1.37760 * 120.15758 * 179.97438 * 5 4 3 7 7 C 1.39800 * 119.99493 * 0.02562 * 6 5 4 8 8 C 1.47416 * 120.08007 * 180.02562 * 7 6 5 9 9 O 1.21545 * 120.00345 * 179.97438 * 8 7 6 10 10 O 1.34776 * 120.00006 * 0.02562 * 8 7 6 11 11 C 1.34858 * 116.99865 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00377 * 0.02562 * 11 10 8 13 13 C 1.38805 * 119.99534 * 179.97438 * 11 10 8 14 14 N 1.31425 * 119.99529 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00076 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46660 * 90.00328 * 15 13 11 17 17 H 1.48497 * 109.47031 * 210.00050 * 15 13 11 18 18 H 1.48499 * 109.46904 * 330.00256 * 15 13 11 19 19 C 1.39830 * 119.84247 * 359.72125 * 7 6 5 20 20 C 1.38106 * 119.83820 * 0.53394 * 19 7 6 21 21 O 1.36001 * 119.99369 * 179.76807 * 20 19 7 22 22 C 1.42903 * 117.00304 * 359.72227 * 21 20 19 23 23 H 1.09008 * 109.47071 * 300.00025 * 1 2 3 24 24 H 1.08998 * 109.47238 * 60.00178 * 1 2 3 25 25 H 1.08997 * 109.46590 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47143 * 240.00057 * 2 1 3 27 27 H 1.08998 * 109.47238 * 119.99822 * 2 1 3 28 28 H 1.07992 * 119.92061 * 0.02562 * 5 4 3 29 29 H 1.07999 * 120.00590 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99179 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.07718 * 180.27363 * 19 7 6 32 32 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 33 33 H 1.09001 * 109.46938 * 59.99841 * 22 21 20 34 34 H 1.09004 * 109.46926 * 299.99962 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3525 1.5253 0.0005 5 6 4.1969 0.4228 0.0005 6 6 5.5633 0.5977 0.0005 7 6 6.1029 1.8874 0.0011 8 6 7.5648 2.0767 0.0006 9 8 8.0324 3.1986 0.0006 10 8 8.3830 1.0057 -0.0010 11 6 9.7095 1.2487 -0.0020 12 1 10.0722 2.2659 -0.0011 13 6 10.6087 0.1913 -0.0031 14 7 11.9014 0.4281 -0.0035 15 14 9.9813 -1.5683 -0.0040 16 1 9.8146 -2.0335 -1.4043 17 1 10.9575 -2.4422 0.6950 18 1 8.6733 -1.6277 0.6966 19 6 5.2525 2.9974 -0.0042 20 6 3.8837 2.8144 0.0011 21 8 3.0537 3.8918 0.0007 22 6 3.6663 5.1828 0.0008 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7814 -0.5739 -0.0003 29 1 6.2178 -0.2614 0.0001 30 1 12.5297 -0.3109 -0.0039 31 1 5.6653 3.9954 -0.0083 32 1 2.8937 5.9517 0.0000 33 1 4.2866 5.2906 -0.8890 34 1 4.2860 5.2908 0.8910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057651832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:09 Heat of formation + Delta-G solvation = -148.056453 kcal Electronic energy + Delta-G solvation = -19711.675809 eV Core-core repulsion = 16382.311642 eV Total energy + Delta-G solvation = -3329.364167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85707 -40.98400 -39.61059 -38.04241 -37.24493 -34.54852 -32.91446 -31.56823 -30.94711 -28.57806 -27.50723 -25.14190 -24.36291 -22.70391 -21.77115 -20.24107 -19.82719 -19.00177 -17.85589 -17.38752 -17.31198 -16.86896 -16.74409 -16.42265 -15.98597 -15.84638 -15.28231 -14.65893 -14.33321 -14.24197 -14.11129 -13.72425 -13.47096 -13.27044 -12.96904 -12.93185 -12.47016 -12.42024 -12.30063 -12.08519 -12.01182 -11.84678 -11.63156 -11.28574 -10.86204 -9.94513 -9.01282 -8.58341 -6.43689 -0.34460 0.19772 1.33327 1.35519 1.54178 1.65173 2.06742 2.19006 2.26366 2.34953 2.60668 2.94356 3.65928 3.88403 3.98021 4.03439 4.12807 4.14613 4.22862 4.34542 4.39811 4.43281 4.53324 4.69822 4.86042 4.91069 5.00340 5.07080 5.26717 5.29369 5.40572 5.44943 5.85268 5.99756 6.44190 6.46601 6.76333 7.50591 8.54351 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.005168 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.353608 B = 5416.929307 C = 6622.533229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 O -0.314 6.314 4 C 0.132 3.868 5 C -0.171 4.171 6 C -0.062 4.062 7 C -0.124 4.124 8 C 0.452 3.548 9 O -0.576 6.576 10 O -0.243 6.243 11 C -0.410 4.410 12 H 0.057 0.943 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.982 3.018 16 H -0.257 1.257 17 H -0.264 1.264 18 H -0.243 1.243 19 C -0.121 4.121 20 C 0.081 3.919 21 O -0.316 6.316 22 C 0.016 3.984 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.181 0.819 29 H 0.146 0.854 30 H 0.291 0.709 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.202 -3.928 0.022 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 O -0.228 6.228 4 C 0.085 3.915 5 C -0.189 4.189 6 C -0.080 4.080 7 C -0.125 4.125 8 C 0.302 3.698 9 O -0.474 6.474 10 O -0.152 6.152 11 C -0.486 4.486 12 H 0.075 0.925 13 C -0.183 4.183 14 N -0.552 5.552 15 Si 0.800 3.200 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.166 1.166 19 C -0.140 4.140 20 C 0.035 3.965 21 O -0.230 6.230 22 C -0.078 4.078 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.198 0.802 29 H 0.164 0.836 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.234 -3.573 0.025 24.496 hybrid contribution 1.211 0.180 -0.016 1.224 sum -23.024 -3.393 0.009 23.272 Atomic orbital electron populations 1.21800 0.91342 1.04246 1.03126 1.23269 0.97122 0.80342 1.03096 1.86132 1.17025 1.31840 1.87817 1.18563 0.83990 0.90864 0.98095 1.21300 0.92037 0.99125 1.06429 1.21343 0.95714 0.95752 0.95237 1.18803 0.87623 0.95631 1.10460 1.21444 0.88639 0.82764 0.76938 1.90633 1.78488 1.26665 1.51595 1.83530 1.18092 1.35709 1.77876 1.20382 0.77772 0.95775 1.54626 0.92512 1.25632 0.93947 1.04885 0.93838 1.69692 1.02322 1.35858 1.47303 0.85107 0.79718 0.75020 0.80114 1.18093 1.18828 1.16633 1.21044 0.90984 0.99626 1.02346 1.18038 0.87832 0.86704 1.03923 1.86130 1.33807 1.13809 1.89268 1.23362 1.01033 0.81569 1.01833 0.91981 0.91970 0.87880 0.90279 0.90295 0.80178 0.83623 0.89852 0.83972 0.85122 0.92493 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.51 5.46 71.98 0.39 0.91 16 3 O -0.31 -7.43 9.90 -77.09 -0.76 -8.19 16 4 C 0.13 3.56 6.71 22.71 0.15 3.71 16 5 C -0.17 -4.16 9.01 22.31 0.20 -3.96 16 6 C -0.06 -1.97 9.61 22.53 0.22 -1.76 16 7 C -0.12 -4.90 5.87 -20.10 -0.12 -5.02 16 8 C 0.45 23.37 7.83 70.24 0.55 23.92 16 9 O -0.58 -33.54 15.59 19.69 0.31 -33.23 16 10 O -0.24 -13.39 7.81 10.85 0.08 -13.30 16 11 C -0.41 -25.74 10.11 67.96 0.69 -25.06 16 12 H 0.06 4.06 7.09 -2.91 -0.02 4.04 16 13 C 0.02 1.02 5.50 84.89 0.47 1.49 16 14 N -0.91 -55.28 13.96 21.63 0.30 -54.97 16 15 Si 0.98 42.75 28.62 68.60 1.96 44.71 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.24 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.12 -4.24 8.58 22.62 0.19 -4.05 16 20 C 0.08 2.46 6.69 22.53 0.15 2.61 16 21 O -0.32 -8.84 10.28 -79.55 -0.82 -9.66 16 22 C 0.02 0.34 9.81 113.37 1.11 1.46 16 23 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 0.92 7.65 -2.39 -0.02 0.90 16 27 H 0.08 0.92 7.65 -2.39 -0.02 0.90 16 28 H 0.18 2.85 6.27 -2.91 -0.02 2.83 16 29 H 0.15 4.51 7.60 -2.91 -0.02 4.49 16 30 H 0.29 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.14 5.02 5.87 -2.91 -0.02 5.00 16 32 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.20 7.65 -2.39 -0.02 1.18 16 34 H 0.06 1.20 7.67 -2.38 -0.02 1.18 16 Total: -1.00 -77.77 301.25 6.94 -70.83 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.12 Total: 10.41 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.75 Total: -6.59 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.30 Total: -54.97 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -1.19 Total: -64.38 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.96 Total: 44.71 kcal Total: -77.77 6.94 -70.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057651832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.224 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds