Wall clock time and date at job start Mon Mar 30 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28614 * 124.59125 * 2 1 4 4 C 1.33650 * 115.85682 * 180.19882 * 3 2 1 5 5 C 1.46706 * 123.29951 * 179.75832 * 4 3 2 6 6 C 1.35234 * 120.00260 * 359.70399 * 5 4 3 7 7 C 1.41705 * 120.00349 * 180.02562 * 6 5 4 8 8 O 1.21762 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00068 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99828 * 0.28034 * 9 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 12 12 C 1.50703 * 109.46877 * 90.00288 * 11 9 7 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00254 * 180.02562 * 14 12 11 16 16 Si 1.86811 * 119.99850 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46778 * 89.99559 * 16 14 12 18 18 H 1.48493 * 109.46886 * 209.99446 * 16 14 12 19 19 H 1.48492 * 109.47026 * 329.99859 * 16 14 12 20 20 C 1.36519 * 113.39884 * 359.48916 * 4 3 2 21 21 S 1.70724 * 124.59885 * 179.66280 * 2 1 3 22 22 H 1.08998 * 109.46512 * 180.31065 * 1 2 3 23 23 H 1.09000 * 109.46962 * 300.31169 * 1 2 3 24 24 H 1.08991 * 109.46845 * 60.31116 * 1 2 3 25 25 H 1.08004 * 120.00442 * 179.70850 * 5 4 3 26 26 H 1.08004 * 119.99297 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.46661 * 269.71691 * 10 9 7 28 28 H 1.08993 * 109.47575 * 29.72405 * 10 9 7 29 29 H 1.09001 * 109.46870 * 149.72361 * 10 9 7 30 30 H 1.09000 * 109.46803 * 209.99767 * 11 9 7 31 31 H 1.09000 * 109.47214 * 330.00561 * 11 9 7 32 32 H 0.97008 * 120.00053 * 180.02562 * 15 14 12 33 33 H 1.08001 * 125.64053 * 180.28769 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2372 1.0588 0.0000 4 6 3.5582 0.8558 -0.0042 5 6 4.5405 1.9455 -0.0100 6 6 4.1234 3.2319 -0.0174 7 6 5.0722 4.2844 -0.0236 8 8 6.2630 4.0306 -0.0227 9 7 4.6564 5.5664 -0.0315 10 6 3.2236 5.8718 -0.0275 11 6 5.6374 6.6546 -0.0373 12 6 5.9746 7.0192 -1.4602 13 1 5.5048 6.4933 -2.2782 14 6 6.8819 8.0249 -1.7176 15 7 7.1759 8.3434 -2.9592 16 14 7.6939 8.9349 -0.3026 17 1 8.9492 8.2389 0.0782 18 1 8.0062 10.3247 -0.7222 19 1 6.7718 8.9645 0.8610 20 6 3.9038 -0.4649 0.0034 21 16 2.4765 -1.4053 0.0083 22 1 -0.3632 -1.0277 0.0056 23 1 -0.3633 0.5187 0.8872 24 1 -0.3633 0.5090 -0.8927 25 1 5.5968 1.7204 -0.0084 26 1 3.0670 3.4570 -0.0186 27 1 2.8649 5.9447 -1.0542 28 1 2.6845 5.0787 0.4904 29 1 3.0556 6.8195 0.4842 30 1 5.2192 7.5234 0.4710 31 1 6.5414 6.3316 0.4789 32 1 7.8146 9.0508 -3.1403 33 1 4.9123 -0.8514 0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058185940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:30 Heat of formation + Delta-G solvation = 31.547291 kcal Electronic energy + Delta-G solvation = -17002.156205 eV Core-core repulsion = 14155.625862 eV Total energy + Delta-G solvation = -2846.530342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02887 -39.08687 -34.97500 -33.77623 -32.51738 -31.42859 -28.77781 -28.32232 -26.11192 -24.84775 -22.78019 -21.24546 -19.90195 -18.54061 -17.24418 -16.90719 -16.84208 -15.30441 -15.21908 -15.19138 -14.58127 -14.07473 -13.85309 -13.48243 -13.09774 -12.99618 -12.55213 -12.42785 -12.31821 -12.19665 -11.80400 -11.67505 -11.29274 -10.85969 -10.48648 -10.18456 -10.05331 -9.93359 -9.77490 -9.50839 -9.08081 -8.54759 -8.27558 -7.60845 -6.04377 -4.02769 0.30472 1.11466 1.37660 1.53202 2.93336 3.32493 3.38417 3.40105 3.80955 3.95758 4.11259 4.43460 4.72013 4.92717 5.02390 5.12755 5.16488 5.26609 5.37717 5.43607 5.57465 5.70495 5.97647 6.02480 6.22874 6.34032 6.49491 6.77914 7.00299 7.39515 7.49231 7.65511 8.28633 8.51620 8.96663 9.02413 9.55813 11.09156 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041535 B = 0.003628 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.966338 B = 7716.202836 C = 7977.770311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.027 3.973 3 N -0.452 5.452 4 C 0.090 3.910 5 C -0.027 4.027 6 C -0.161 4.161 7 C 0.534 3.466 8 O -0.546 6.546 9 N -0.591 5.591 10 C 0.084 3.916 11 C 0.214 3.786 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.281 4.281 21 S 0.180 5.820 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.146 0.854 26 H 0.135 0.865 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 -18.991 8.116 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.252 4.252 3 N -0.167 5.167 4 C -0.042 4.042 5 C -0.049 4.049 6 C -0.184 4.184 7 C 0.324 3.676 8 O -0.427 6.427 9 N -0.322 5.322 10 C -0.060 4.060 11 C 0.094 3.906 12 C -0.566 4.566 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.421 4.421 21 S 0.437 5.563 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.163 0.837 26 H 0.153 0.847 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.349 -19.506 8.017 25.508 hybrid contribution 1.161 1.389 0.443 1.864 sum -13.188 -18.117 8.460 23.952 Atomic orbital electron populations 1.20426 0.85049 1.03431 1.04661 1.27100 1.02183 0.91490 1.04458 1.66893 1.03727 1.30813 1.15256 1.19611 0.89196 0.92368 1.02999 1.21701 0.97337 0.90112 0.95798 1.22440 1.01034 0.93394 1.01571 1.16992 0.88690 0.83320 0.78556 1.90788 1.17536 1.83840 1.50514 1.47778 1.07178 1.06485 1.70773 1.21716 0.81526 1.01055 1.01723 1.19696 0.88218 0.84311 0.98412 1.21340 1.25298 1.18666 0.91260 0.90770 1.24864 0.95969 0.96661 0.95590 1.69903 1.34390 1.30926 1.18508 0.86832 0.80647 0.79205 0.82901 1.19893 1.21080 1.19064 1.26819 1.05205 0.96982 1.13124 1.82667 0.95638 1.12096 1.65895 0.90305 0.89371 0.89303 0.83656 0.84699 0.92716 0.91938 0.91384 0.95177 0.94456 0.92599 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.47 36.01 0.38 -0.09 16 2 C 0.03 0.27 7.33 -13.62 -0.10 0.17 16 3 N -0.45 -6.02 9.96 -8.37 -0.08 -6.11 16 4 C 0.09 1.23 6.66 -84.28 -0.56 0.66 16 5 C -0.03 -0.43 9.52 -37.23 -0.35 -0.78 16 6 C -0.16 -2.83 8.65 -39.33 -0.34 -3.17 16 7 C 0.53 11.81 7.45 -14.94 -0.11 11.69 16 8 O -0.55 -14.09 15.69 5.13 0.08 -14.01 16 9 N -0.59 -13.07 2.86 -186.36 -0.53 -13.60 16 10 C 0.08 1.40 10.17 59.85 0.61 2.01 16 11 C 0.21 5.48 4.27 -5.19 -0.02 5.46 16 12 C -0.53 -15.73 9.94 -34.44 -0.34 -16.07 16 13 H 0.07 2.43 8.06 -52.48 -0.42 2.01 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 16 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 17 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 20 C -0.28 -3.02 10.99 30.11 0.33 -2.68 16 21 S 0.18 1.48 22.89 -107.50 -2.46 -0.98 16 22 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.15 2.29 7.45 -52.48 -0.39 1.89 16 26 H 0.14 2.13 5.62 -52.48 -0.30 1.84 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.86 6.08 -51.93 -0.32 0.54 16 29 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 30 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 31 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -36.29 302.28 -6.78 -43.07 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.83 Total: -1.96 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.61 Total: -0.77 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.16 Total: -47.30 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.46 Total: -0.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.29 -6.78 -43.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058185940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.615 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds