Wall clock time and date at job start Mon Mar 30 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35912 * 117.00151 * 180.02562 * 5 4 3 7 7 C 1.38867 * 119.97792 * 359.72210 * 6 5 4 8 8 C 1.38267 * 120.25211 * 179.72703 * 7 6 5 9 9 C 1.37978 * 120.21535 * 0.55300 * 8 7 6 10 10 C 1.39656 * 119.95725 * 359.71951 * 9 8 7 11 11 C 1.47672 * 120.12703 * 180.02562 * 10 9 8 12 12 O 1.21504 * 120.00276 * 179.97438 * 11 10 9 13 13 O 1.34740 * 119.99967 * 359.97438 * 11 10 9 14 14 C 1.34848 * 117.00167 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99849 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00236 * 180.02562 * 14 13 11 17 17 N 1.31418 * 120.00207 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00046 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47399 * 89.99885 * 18 16 14 20 20 H 1.48501 * 109.47552 * 210.00142 * 18 16 14 21 21 H 1.48505 * 109.46837 * 330.00093 * 18 16 14 22 22 C 1.38426 * 119.97911 * 179.97438 * 6 5 4 23 23 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 24 24 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 27 27 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 29 29 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 30 30 H 1.08000 * 119.87307 * 359.97438 * 7 6 5 31 31 H 1.08008 * 119.88955 * 180.25413 * 8 7 6 32 32 H 1.08002 * 120.02194 * 179.74922 * 9 8 7 33 33 H 0.96997 * 119.99961 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.10892 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3020 0.3978 -1.3837 7 6 6.1824 0.7997 -0.3878 8 6 7.5434 0.6123 -0.5440 9 6 8.0372 0.0347 -1.6957 10 6 7.1602 -0.3677 -2.7053 11 6 7.6845 -0.9868 -3.9392 12 8 6.9195 -1.3365 -4.8160 13 8 9.0114 -1.1638 -4.0929 14 6 9.4237 -1.7352 -5.2426 15 1 8.7009 -2.0276 -5.9899 16 6 10.7772 -1.9476 -5.4657 17 7 11.1791 -2.5039 -6.5864 18 14 12.0274 -1.4424 -4.1730 19 1 12.2579 -2.5734 -3.2386 20 1 13.3059 -1.0796 -4.8357 21 1 11.5125 -0.2727 -3.4168 22 6 5.7858 -0.1833 -2.5432 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8515 0.5683 0.8410 29 1 3.9785 2.1765 0.0889 30 1 5.8023 1.2569 0.5138 31 1 8.2226 0.9234 0.2361 32 1 9.1011 -0.1065 -1.8161 33 1 12.1249 -2.6526 -6.7421 34 1 5.1023 -0.4930 -3.3199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064060882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:03 Heat of formation + Delta-G solvation = -131.314456 kcal Electronic energy + Delta-G solvation = -19158.253477 eV Core-core repulsion = 15829.615297 eV Total energy + Delta-G solvation = -3328.638180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18922 -39.14341 -38.12784 -36.94371 -35.29354 -32.37243 -31.44177 -30.86756 -29.32667 -26.66351 -25.87305 -24.03710 -22.51633 -22.16481 -20.05149 -18.30700 -17.98520 -17.12408 -16.60850 -16.15670 -15.87892 -15.54954 -15.34895 -15.00669 -14.68439 -14.59327 -14.11365 -13.52771 -13.20154 -12.82807 -12.51874 -12.45261 -12.27223 -11.90758 -11.63944 -11.58082 -11.32466 -10.95340 -10.83178 -10.51468 -10.39678 -10.03717 -9.73440 -9.23952 -8.82691 -8.70815 -8.10932 -6.42109 -4.13032 1.07668 1.59767 3.01609 3.15599 3.23137 3.33692 3.38205 3.40781 4.14199 4.21977 4.22445 4.55623 4.76233 4.85945 4.93219 4.98153 5.02311 5.05498 5.10088 5.11087 5.28879 5.38314 5.48185 5.50844 5.64423 6.09560 6.17643 6.36993 6.58911 6.71309 6.78301 6.86995 7.44797 7.69706 7.99950 8.60337 8.95646 9.64972 10.65743 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.039379 B = 0.003704 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.864825 B = 7557.173421 C = 8159.058643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.306 6.306 6 C 0.118 3.882 7 C -0.197 4.197 8 C -0.092 4.092 9 C -0.114 4.114 10 C -0.048 4.048 11 C 0.444 3.556 12 O -0.533 6.533 13 O -0.240 6.240 14 C -0.373 4.373 15 H 0.112 0.888 16 C 0.065 3.935 17 N -0.868 5.868 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.258 1.258 22 C -0.100 4.100 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.281 0.719 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 9.786 17.621 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.220 6.220 6 C 0.073 3.927 7 C -0.216 4.216 8 C -0.110 4.110 9 C -0.133 4.133 10 C -0.050 4.050 11 C 0.291 3.709 12 O -0.429 6.429 13 O -0.149 6.149 14 C -0.449 4.449 15 H 0.129 0.871 16 C -0.139 4.139 17 N -0.506 5.506 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.118 4.118 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.171 9.402 17.122 24.132 hybrid contribution 0.510 0.451 0.599 0.907 sum -13.661 9.853 17.721 24.448 Atomic orbital electron populations 1.22761 0.80860 1.03056 0.99880 1.87993 1.19791 1.27028 1.95385 1.22580 0.91666 0.85841 1.01341 1.22808 0.93612 0.98192 0.86845 1.86137 1.19980 1.77172 1.38694 1.18689 0.82323 0.97205 0.94502 1.21301 0.94292 1.06445 0.99559 1.20860 0.94439 0.98295 0.97438 1.21461 1.00674 0.98273 0.92843 1.19099 0.92596 0.99711 0.93550 1.20396 0.81979 0.81607 0.86895 1.90679 1.58156 1.50825 1.43231 1.83525 1.22950 1.67560 1.40827 1.20738 0.93899 1.37272 0.92945 0.87062 1.24582 0.96713 0.95629 0.97005 1.69593 1.17165 1.40145 1.23708 0.86215 0.79597 0.80101 0.81076 1.19676 1.20643 1.18189 1.20402 0.94389 1.00386 0.96668 0.93866 0.89432 0.94178 0.91204 0.91980 0.91097 0.90463 0.85585 0.85387 0.84447 0.90847 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.19 10.67 -40.08 -0.43 -4.62 16 3 C 0.06 0.52 6.32 37.16 0.23 0.75 16 4 C 0.06 0.58 5.12 37.16 0.19 0.77 16 5 O -0.31 -4.33 10.10 -24.31 -0.25 -4.57 16 6 C 0.12 1.80 6.68 -39.28 -0.26 1.54 16 7 C -0.20 -2.53 9.03 -39.34 -0.36 -2.89 16 8 C -0.09 -1.24 10.02 -39.67 -0.40 -1.64 16 9 C -0.11 -1.95 9.61 -39.15 -0.38 -2.32 16 10 C -0.05 -0.97 5.87 -105.00 -0.62 -1.59 16 11 C 0.44 11.22 7.84 34.58 0.27 11.49 16 12 O -0.53 -14.96 15.59 -19.27 -0.30 -15.26 16 13 O -0.24 -6.50 7.82 -21.64 -0.17 -6.66 16 14 C -0.37 -11.22 10.11 30.94 0.31 -10.91 16 15 H 0.11 3.68 7.09 -52.48 -0.37 3.31 16 16 C 0.07 1.87 5.50 -17.52 -0.10 1.77 16 17 N -0.87 -25.64 13.96 55.49 0.77 -24.86 16 18 Si 0.91 21.21 28.62 -169.99 -4.86 16.35 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.10 -1.82 9.53 -39.00 -0.37 -2.20 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 29 H 0.08 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.13 1.18 6.28 -52.49 -0.33 0.85 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.14 2.36 7.61 -52.49 -0.40 1.96 16 33 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.14 2.72 7.65 -52.49 -0.40 2.32 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -34.36 305.73 -4.95 -39.31 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.97 Total: -0.41 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.35 Total: -3.88 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.86 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.14 Total: -31.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.36 -4.95 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064060882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.003 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds