Wall clock time and date at job start Mon Mar 30 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35912 * 117.00151 * 180.02562 * 5 4 3 7 7 C 1.38867 * 119.97792 * 359.72210 * 6 5 4 8 8 C 1.38267 * 120.25211 * 179.72703 * 7 6 5 9 9 C 1.37978 * 120.21535 * 0.55300 * 8 7 6 10 10 C 1.39656 * 119.95725 * 359.71951 * 9 8 7 11 11 C 1.47672 * 120.12703 * 180.02562 * 10 9 8 12 12 O 1.21504 * 120.00276 * 179.97438 * 11 10 9 13 13 O 1.34740 * 119.99967 * 359.97438 * 11 10 9 14 14 C 1.34848 * 117.00167 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99849 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00236 * 180.02562 * 14 13 11 17 17 N 1.31418 * 120.00207 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00046 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47399 * 89.99885 * 18 16 14 20 20 H 1.48501 * 109.47552 * 210.00142 * 18 16 14 21 21 H 1.48505 * 109.46837 * 330.00093 * 18 16 14 22 22 C 1.38426 * 119.97911 * 179.97438 * 6 5 4 23 23 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 24 24 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 27 27 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 29 29 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 30 30 H 1.08000 * 119.87307 * 359.97438 * 7 6 5 31 31 H 1.08008 * 119.88955 * 180.25413 * 8 7 6 32 32 H 1.08002 * 120.02194 * 179.74922 * 9 8 7 33 33 H 0.96997 * 119.99961 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.10892 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3020 0.3978 -1.3837 7 6 6.1824 0.7997 -0.3878 8 6 7.5434 0.6123 -0.5440 9 6 8.0372 0.0347 -1.6957 10 6 7.1602 -0.3677 -2.7053 11 6 7.6845 -0.9868 -3.9392 12 8 6.9195 -1.3365 -4.8160 13 8 9.0114 -1.1638 -4.0929 14 6 9.4237 -1.7352 -5.2426 15 1 8.7009 -2.0276 -5.9899 16 6 10.7772 -1.9476 -5.4657 17 7 11.1791 -2.5039 -6.5864 18 14 12.0274 -1.4424 -4.1730 19 1 12.2579 -2.5734 -3.2386 20 1 13.3059 -1.0796 -4.8357 21 1 11.5125 -0.2727 -3.4168 22 6 5.7858 -0.1833 -2.5432 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8515 0.5683 0.8410 29 1 3.9785 2.1765 0.0889 30 1 5.8023 1.2569 0.5138 31 1 8.2226 0.9234 0.2361 32 1 9.1011 -0.1065 -1.8161 33 1 12.1249 -2.6526 -6.7421 34 1 5.1023 -0.4930 -3.3199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064060882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:03 Heat of formation + Delta-G solvation = -155.448989 kcal Electronic energy + Delta-G solvation = -19159.300029 eV Core-core repulsion = 15829.615297 eV Total energy + Delta-G solvation = -3329.684732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58853 -40.81986 -38.99946 -38.08933 -37.36877 -34.57295 -32.43828 -32.11202 -30.39094 -27.93553 -27.24939 -25.33716 -23.69435 -23.36064 -21.58502 -20.24208 -19.70030 -18.14274 -17.80295 -17.36568 -16.84355 -16.82216 -16.80221 -16.42472 -16.15008 -15.94921 -15.54948 -14.79898 -14.54660 -14.36405 -14.06342 -13.80308 -13.36837 -13.14792 -12.92771 -12.67413 -12.46987 -12.34634 -12.32758 -11.94846 -11.86168 -11.79270 -11.29172 -10.87644 -10.65659 -10.12866 -9.29704 -8.59839 -6.45795 -0.31977 0.37363 1.32622 1.35803 1.54061 1.68078 1.93735 2.26552 2.49290 2.70813 2.82911 2.94586 3.75840 3.86858 4.01513 4.07876 4.15609 4.21500 4.30919 4.37970 4.44484 4.52887 4.55216 4.63364 4.74718 4.85589 4.87037 5.16456 5.32019 5.38020 5.40978 5.63852 5.84306 6.19830 6.41316 6.42491 6.74215 7.47852 8.52903 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.039379 B = 0.003704 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.864825 B = 7557.173421 C = 8159.058643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.048 3.952 5 O -0.328 6.328 6 C 0.122 3.878 7 C -0.167 4.167 8 C -0.073 4.073 9 C -0.117 4.117 10 C -0.081 4.081 11 C 0.446 3.554 12 O -0.576 6.576 13 O -0.240 6.240 14 C -0.412 4.412 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 0.985 3.015 19 H -0.256 1.256 20 H -0.262 1.262 21 H -0.243 1.243 22 C -0.121 4.121 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.137 0.863 33 H 0.292 0.708 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 12.311 22.606 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.026 4.026 5 O -0.243 6.243 6 C 0.077 3.923 7 C -0.186 4.186 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.083 4.083 11 C 0.295 3.705 12 O -0.473 6.473 13 O -0.149 6.149 14 C -0.487 4.487 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.551 5.551 18 Si 0.803 3.197 19 H -0.181 1.181 20 H -0.186 1.186 21 H -0.167 1.167 22 C -0.140 4.140 23 H 0.064 0.936 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.194 0.806 31 H 0.196 0.804 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.706 11.931 22.104 28.614 hybrid contribution 0.051 -0.268 -0.852 0.895 sum -13.655 11.663 21.251 27.822 Atomic orbital electron populations 1.22904 0.79448 1.03601 1.01056 1.87935 1.21571 1.28819 1.95671 1.22799 0.90981 0.85183 1.02928 1.23300 0.94532 0.99709 0.85107 1.86139 1.19165 1.77548 1.41416 1.18658 0.83603 0.96326 0.93751 1.21861 0.93566 1.03378 0.99765 1.21355 0.95466 0.95680 0.96539 1.21583 1.00175 0.98475 0.93315 1.18826 0.93812 1.03097 0.92540 1.21645 0.81148 0.79627 0.88090 1.90638 1.58929 1.52391 1.45379 1.83522 1.23817 1.68180 1.39350 1.20393 0.94022 1.40609 0.93691 0.92671 1.25671 0.98409 0.94573 0.99713 1.69688 1.18505 1.40922 1.25938 0.85068 0.76339 0.80513 0.77755 1.18058 1.18648 1.16664 1.20273 0.93427 1.02243 0.98047 0.93634 0.89373 0.91994 0.87594 0.92281 0.89904 0.87187 0.80559 0.80425 0.84538 0.89756 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.44 10.67 -144.35 -1.54 -9.98 16 3 C 0.06 0.77 6.32 71.98 0.45 1.23 16 4 C 0.05 0.70 5.12 71.98 0.37 1.07 16 5 O -0.33 -8.60 10.10 -87.93 -0.89 -9.49 16 6 C 0.12 3.46 6.68 22.47 0.15 3.61 16 7 C -0.17 -3.37 9.03 22.43 0.20 -3.17 16 8 C -0.07 -1.56 10.02 22.21 0.22 -1.34 16 9 C -0.12 -3.74 9.61 22.55 0.22 -3.52 16 10 C -0.08 -3.35 5.87 -20.11 -0.12 -3.47 16 11 C 0.45 24.03 7.84 70.31 0.55 24.58 16 12 O -0.58 -35.34 15.59 19.82 0.31 -35.03 16 13 O -0.24 -13.60 7.82 11.33 0.09 -13.51 16 14 C -0.41 -26.45 10.11 67.96 0.69 -25.76 16 15 H 0.06 4.04 7.09 -2.91 -0.02 4.02 16 16 C 0.02 1.00 5.50 84.89 0.47 1.47 16 17 N -0.91 -56.00 13.96 21.63 0.30 -55.70 16 18 Si 0.99 43.52 28.62 68.60 1.96 45.48 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.24 -10.10 7.11 99.48 0.71 -9.40 16 22 C -0.12 -4.55 9.53 22.65 0.22 -4.33 16 23 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 29 H 0.11 0.91 7.65 -2.39 -0.02 0.89 16 30 H 0.18 1.86 6.28 -2.91 -0.02 1.84 16 31 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.14 4.37 7.61 -2.91 -0.02 4.35 16 33 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 34 H 0.12 4.84 7.65 -2.91 -0.02 4.82 16 Total: -1.00 -83.76 305.73 6.01 -77.75 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.11 Total: 8.54 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.67 Total: -8.05 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -2.03 Total: -68.02 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.96 Total: 45.48 kcal Total: -83.76 6.01 -77.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064060882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.702 kcal (2) G-P(sol) polarization free energy of solvation -83.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds