Wall clock time and date at job start Mon Mar 30 2020 00:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29372 * 124.70615 * 2 1 4 4 C 1.30944 * 117.46541 * 180.26252 * 3 2 1 5 5 C 1.50710 * 123.03557 * 180.02562 * 4 3 2 6 6 C 1.36779 * 113.92500 * 0.02562 * 4 3 2 7 7 C 1.46565 * 126.17836 * 179.97438 * 6 4 3 8 8 O 1.21720 * 119.99804 * 350.77036 * 7 6 4 9 9 N 1.34775 * 119.99774 * 170.77401 * 7 6 4 10 10 C 1.36885 * 119.99736 * 181.60445 * 9 7 6 11 11 H 1.08002 * 119.99958 * 222.73556 * 10 9 7 12 12 C 1.39011 * 120.00158 * 42.74313 * 10 9 7 13 13 N 1.31392 * 119.99706 * 16.14771 * 12 10 9 14 14 Si 1.86803 * 119.99919 * 196.14824 * 12 10 9 15 15 H 1.48494 * 109.47039 * 59.99971 * 14 12 10 16 16 H 1.48500 * 109.46762 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47111 * 299.99518 * 14 12 10 18 18 C 1.46497 * 119.99858 * 1.60364 * 9 7 6 19 19 C 1.53008 * 117.49869 * 181.01353 * 18 9 7 20 20 C 1.53006 * 117.49995 * 112.35398 * 18 9 7 21 21 S 1.70926 * 124.69796 * 180.29915 * 2 1 3 22 22 H 1.09000 * 109.47334 * 269.70255 * 1 2 3 23 23 H 1.08997 * 109.46768 * 29.69607 * 1 2 3 24 24 H 1.08992 * 109.47311 * 149.69576 * 1 2 3 25 25 H 1.08999 * 109.46516 * 269.99981 * 5 4 3 26 26 H 1.08998 * 109.46729 * 29.99908 * 5 4 3 27 27 H 1.08996 * 109.47105 * 150.00032 * 5 4 3 28 28 H 0.97003 * 119.99883 * 184.97614 * 13 12 10 29 29 H 1.08999 * 115.55603 * 326.67924 * 18 9 7 30 30 H 1.08995 * 117.49567 * 359.97438 * 19 18 9 31 31 H 1.08992 * 117.49714 * 145.02151 * 19 18 9 32 32 H 1.08996 * 117.49921 * 214.97727 * 20 18 9 33 33 H 1.09000 * 117.49269 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0635 0.0000 4 6 3.5426 0.8985 -0.0053 5 6 4.5169 2.0483 -0.0054 6 6 3.9353 -0.4117 -0.0108 7 6 5.3169 -0.9008 -0.0179 8 8 6.2371 -0.1225 -0.1885 9 7 5.5684 -2.2123 0.1643 10 6 6.8602 -2.6642 0.1905 11 1 7.1245 -3.5744 -0.3274 12 6 7.8320 -1.9518 0.8837 13 7 7.4775 -1.0421 1.7630 14 14 9.6417 -2.2878 0.5651 15 1 9.9509 -2.0205 -0.8625 16 1 10.4682 -1.4024 1.4243 17 1 9.9445 -3.7070 0.8799 18 6 4.4592 -3.1540 0.3345 19 6 4.8106 -4.6259 0.5612 20 6 4.2233 -4.1764 -0.7791 21 16 2.4800 -1.4053 -0.0073 22 1 -0.3634 -0.0053 1.0276 23 1 -0.3633 0.8927 -0.5091 24 1 -0.3633 -0.8872 -0.5185 25 1 4.7479 2.3286 -1.0331 26 1 4.0746 2.8993 0.5126 27 1 5.4326 1.7486 0.5041 28 1 8.1527 -0.4948 2.1938 29 1 3.5833 -2.7606 0.8503 30 1 5.8670 -4.8934 0.5833 31 1 4.1656 -5.2006 1.2257 32 1 3.1923 -4.4558 -0.9957 33 1 4.8938 -4.1485 -1.6381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:56 Heat of formation + Delta-G solvation = 50.348970 kcal Electronic energy + Delta-G solvation = -18426.808253 eV Core-core repulsion = 15581.093213 eV Total energy + Delta-G solvation = -2845.715040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.40767 -38.48096 -36.10457 -33.12772 -32.19554 -31.11708 -28.73373 -27.77687 -24.95586 -22.43312 -21.94989 -21.53494 -20.84843 -18.46728 -17.17778 -16.34871 -16.24089 -14.94075 -14.75196 -14.56501 -13.89846 -13.69540 -13.40291 -13.23404 -12.82174 -12.64086 -12.40423 -11.75476 -11.73476 -11.55527 -11.22899 -11.06987 -10.95131 -10.81013 -10.70775 -10.30731 -10.16091 -10.02538 -9.07212 -8.84069 -8.65317 -8.21130 -7.96845 -7.22199 -6.22252 -4.00549 0.96634 1.85492 2.25355 3.18146 3.25976 3.32261 3.34609 4.13450 4.25990 4.50686 4.70462 4.73555 5.20017 5.30856 5.40628 5.53851 5.54454 5.59323 5.62145 5.79538 5.91935 5.96994 6.11173 6.29864 6.30698 6.46171 6.53055 6.58160 6.76535 7.06295 7.45842 8.08280 8.28811 8.86167 8.99075 9.45042 10.10313 10.82605 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.008094 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.662559 B = 3458.506308 C = 4429.014641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.014 4.014 3 N -0.476 5.476 4 C 0.100 3.900 5 C -0.073 4.073 6 C -0.238 4.238 7 C 0.544 3.456 8 O -0.513 6.513 9 N -0.412 5.412 10 C -0.335 4.335 11 H 0.085 0.915 12 C 0.067 3.933 13 N -0.819 5.819 14 Si 0.916 3.084 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.276 1.276 18 C 0.052 3.948 19 C -0.162 4.162 20 C -0.198 4.198 21 S 0.157 5.843 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.269 0.731 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 -3.022 -2.094 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.288 4.288 3 N -0.192 5.192 4 C -0.036 4.036 5 C -0.132 4.132 6 C -0.362 4.362 7 C 0.331 3.669 8 O -0.392 6.392 9 N -0.131 5.131 10 C -0.462 4.462 11 H 0.102 0.898 12 C -0.145 4.145 13 N -0.452 5.452 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.201 1.201 18 C -0.057 4.057 19 C -0.200 4.200 20 C -0.237 4.237 21 S 0.414 5.586 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.582 -3.058 -1.990 11.194 hybrid contribution 1.224 0.571 0.045 1.351 sum -9.359 -2.487 -1.945 9.877 Atomic orbital electron populations 1.20309 0.86215 1.03373 1.03079 1.27492 1.01791 0.94384 1.05138 1.65928 1.04830 1.32187 1.16238 1.20700 0.89470 0.93756 0.99710 1.20426 0.97240 0.92940 1.02636 1.26441 0.98545 0.96296 1.14932 1.16292 0.84306 0.83351 0.82903 1.90627 1.43617 1.53936 1.51028 1.42640 1.04073 1.03905 1.62495 1.18951 0.82640 1.12447 1.32205 0.89777 1.25282 1.00025 0.96355 0.92810 1.69859 1.35287 1.19318 1.20756 0.86213 0.82993 0.77847 0.78723 1.19831 1.20979 1.20141 1.22057 0.93011 0.88326 1.02280 1.23106 1.02877 0.95605 0.98399 1.23378 1.01319 1.05235 0.93739 1.84111 0.96857 1.09945 1.67641 0.90347 0.90097 0.90676 0.91273 0.92159 0.88214 0.92068 0.87440 0.87115 0.89263 0.89151 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.46 36.01 0.38 -0.42 16 2 C -0.01 -0.23 7.37 -13.31 -0.10 -0.32 16 3 N -0.48 -9.35 10.49 -7.46 -0.08 -9.43 16 4 C 0.10 2.15 6.83 -83.49 -0.57 1.58 16 5 C -0.07 -1.49 9.62 36.01 0.35 -1.14 16 6 C -0.24 -5.36 6.33 -36.75 -0.23 -5.59 16 7 C 0.54 14.29 6.84 -12.90 -0.09 14.20 16 8 O -0.51 -14.94 12.10 5.17 0.06 -14.87 16 9 N -0.41 -10.35 2.84 -109.23 -0.31 -10.66 16 10 C -0.34 -8.89 8.07 -15.01 -0.12 -9.01 16 11 H 0.08 2.11 7.07 -52.49 -0.37 1.74 16 12 C 0.07 1.83 4.45 -17.45 -0.08 1.75 16 13 N -0.82 -23.70 11.48 55.50 0.64 -23.06 16 14 Si 0.92 21.15 29.59 -169.99 -5.03 16.12 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.05 1.04 4.67 -67.92 -0.32 0.72 16 19 C -0.16 -2.79 9.80 -26.69 -0.26 -3.06 16 20 C -0.20 -3.27 10.34 -26.69 -0.28 -3.54 16 21 S 0.16 2.71 18.20 -107.50 -1.96 0.76 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 2.29 6.30 -51.93 -0.33 1.97 16 28 H 0.27 7.47 8.32 -40.82 -0.34 7.13 16 29 H 0.11 2.07 4.49 -22.51 -0.10 1.97 16 30 H 0.11 2.07 6.63 -51.93 -0.34 1.73 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -32.05 288.72 -7.30 -39.35 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.66 Total: 2.28 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.32 Total: -4.84 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.25 Total: -43.15 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.06 Total: -14.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.96 Total: 0.76 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.05 -7.30 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.698 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds