Wall clock time and date at job start Mon Mar 30 2020 00:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29025 * 124.91662 * 2 1 4 4 C 1.31776 * 117.12453 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.75125 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47119 * 305.02728 * 5 4 3 7 7 O 1.21297 * 120.00152 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99946 * 179.97438 * 6 5 4 9 9 C 1.37098 * 119.99701 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99876 * 224.47126 * 9 8 6 11 11 C 1.38951 * 120.00475 * 44.47748 * 9 8 6 12 12 N 1.31417 * 119.99782 * 18.00280 * 11 9 8 13 13 Si 1.86797 * 120.00120 * 198.01112 * 11 9 8 14 14 H 1.48495 * 109.47490 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47372 * 119.99859 * 13 11 9 16 16 H 1.48509 * 109.46687 * 239.99742 * 13 11 9 17 17 C 1.46497 * 120.00324 * 0.02562 * 8 6 5 18 18 C 1.52995 * 117.50285 * 183.20858 * 17 8 6 19 19 C 1.52995 * 117.50149 * 114.54273 * 17 8 6 20 20 C 1.33640 * 114.50273 * 0.23358 * 4 3 2 21 21 S 1.70974 * 124.91534 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46942 * 89.99436 * 1 2 3 23 23 H 1.08995 * 109.47498 * 210.00011 * 1 2 3 24 24 H 1.09004 * 109.47053 * 330.00091 * 1 2 3 25 25 H 1.08996 * 109.47378 * 65.02956 * 5 4 3 26 26 H 1.09002 * 109.46918 * 185.02650 * 5 4 3 27 27 H 0.96993 * 119.99611 * 174.96278 * 12 11 9 28 28 H 1.09001 * 115.54559 * 328.87598 * 17 8 6 29 29 H 1.09002 * 117.49408 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.50097 * 145.02057 * 18 17 8 31 31 H 1.09004 * 117.50036 * 214.97848 * 19 17 8 32 32 H 1.09000 * 117.49933 * 359.97438 * 19 17 8 33 33 H 1.08003 * 126.04198 * 179.76240 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.2379 2.9355 -1.1641 7 8 3.3240 2.6798 -1.9195 8 7 4.9916 4.0345 -1.3660 9 6 4.7248 4.8635 -2.4249 10 1 5.5336 5.2367 -3.0357 11 6 3.4140 5.2238 -2.7122 12 7 2.4782 5.0801 -1.8007 13 14 2.9818 5.9123 -4.3940 14 1 4.2054 5.9741 -5.2330 15 1 1.9780 5.0332 -5.0458 16 1 2.4183 7.2777 -4.2400 17 6 6.0958 4.3432 -0.4541 18 6 6.8663 5.6434 -0.6922 19 6 7.5155 4.2971 -1.0226 20 6 3.9354 -0.4006 -0.0040 21 16 2.4856 -1.4020 0.0006 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 4.4370 2.5833 0.9312 26 1 5.5449 1.6351 -0.0894 27 1 1.5788 5.3987 -1.9747 28 1 5.9564 4.0226 0.5783 29 1 6.5518 6.2689 -1.5276 30 1 7.2342 6.1779 0.1836 31 1 8.3102 3.9466 -0.3641 32 1 7.6280 4.0366 -2.0751 33 1 4.9546 -0.7581 -0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:08 Heat of formation + Delta-G solvation = 28.491098 kcal Electronic energy + Delta-G solvation = -18098.107309 eV Core-core repulsion = 15251.444440 eV Total energy + Delta-G solvation = -2846.662869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05361 -39.90776 -37.62136 -34.81326 -33.84033 -32.77254 -30.52715 -28.78887 -26.71205 -23.90188 -23.07682 -22.73341 -21.34056 -20.46046 -18.72290 -17.97342 -17.72610 -16.79590 -16.21269 -15.86812 -15.83152 -15.49072 -15.02185 -14.56086 -14.40117 -14.02390 -13.79895 -13.35476 -13.15413 -12.95337 -12.88862 -12.71923 -12.60313 -12.22909 -12.12259 -12.06253 -11.61355 -11.17534 -10.70486 -10.37344 -10.23659 -9.90462 -9.48250 -8.90556 -8.14882 -5.93883 -0.14348 0.55197 0.81311 1.32500 1.40197 1.47739 1.94253 2.28599 2.47960 3.14457 3.21183 3.30144 3.42016 4.00210 4.12800 4.21861 4.28742 4.34606 4.42026 4.50635 4.57332 4.62555 4.66014 4.89995 4.92825 5.01506 5.09958 5.27561 5.35699 5.49208 5.52867 6.23873 7.05654 7.09416 7.29601 7.76237 8.45730 8.92513 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.006989 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.852729 B = 4005.378947 C = 5091.769682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.022 3.978 3 N -0.489 5.489 4 C 0.071 3.929 5 C -0.054 4.054 6 C 0.475 3.525 7 O -0.570 6.570 8 N -0.450 5.450 9 C -0.353 4.353 10 H 0.075 0.925 11 C 0.020 3.980 12 N -0.865 5.865 13 Si 0.965 3.035 14 H -0.257 1.257 15 H -0.299 1.299 16 H -0.273 1.273 17 C 0.043 3.957 18 C -0.173 4.173 19 C -0.177 4.177 20 C -0.262 4.262 21 S 0.150 5.850 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.255 0.745 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.073 0.927 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -10.780 7.176 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.256 4.256 3 N -0.204 5.204 4 C -0.061 4.061 5 C -0.097 4.097 6 C 0.263 3.737 7 O -0.450 6.450 8 N -0.171 5.171 9 C -0.481 4.481 10 H 0.093 0.907 11 C -0.186 4.186 12 N -0.500 5.500 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.226 1.226 16 H -0.198 1.198 17 C -0.062 4.062 18 C -0.211 4.211 19 C -0.216 4.216 20 C -0.401 4.401 21 S 0.404 5.596 22 H 0.101 0.899 23 H 0.132 0.868 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.064 0.936 28 H 0.143 0.857 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.341 -11.506 6.805 13.779 hybrid contribution 0.001 1.541 -0.970 1.821 sum 3.342 -9.965 5.836 12.022 Atomic orbital electron populations 1.20530 0.83811 1.04924 1.04095 1.27628 1.03283 0.91158 1.03517 1.66029 1.05913 1.33155 1.15302 1.19927 0.89886 0.94488 1.01796 1.20229 0.98155 0.92977 0.98289 1.20438 0.83955 0.81841 0.87444 1.90501 1.31317 1.73751 1.49411 1.42997 1.28996 1.20088 1.25059 1.19040 0.92333 1.29023 1.07701 0.90716 1.26052 0.96468 0.95735 1.00388 1.69985 1.02547 1.42849 1.34629 0.85328 0.78321 0.77162 0.80092 1.18115 1.22625 1.19810 1.22027 0.86344 1.03573 0.94257 1.23109 1.03148 0.91055 1.03785 1.23333 0.95946 1.00611 1.01661 1.27094 1.04902 0.94869 1.13198 1.83156 0.96518 1.11200 1.68771 0.89853 0.86814 0.90495 0.88633 0.85621 0.93580 0.85713 0.90326 0.86536 0.85466 0.90863 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.94 10.46 71.24 0.75 -1.20 16 2 C 0.02 0.78 7.39 88.52 0.65 1.43 16 3 N -0.49 -21.65 9.68 -179.40 -1.74 -23.39 16 4 C 0.07 2.82 5.64 41.52 0.23 3.05 16 5 C -0.05 -2.14 4.82 29.10 0.14 -2.00 16 6 C 0.47 25.27 6.93 87.66 0.61 25.88 16 7 O -0.57 -36.11 13.22 -3.08 -0.04 -36.15 16 8 N -0.45 -23.17 2.83 -613.15 -1.74 -24.91 16 9 C -0.35 -20.12 7.91 84.04 0.67 -19.46 16 10 H 0.08 4.13 7.26 -2.91 -0.02 4.10 16 11 C 0.02 1.18 4.39 84.93 0.37 1.55 16 12 N -0.87 -55.18 11.75 21.66 0.25 -54.92 16 13 Si 0.97 47.75 29.59 68.60 2.03 49.78 16 14 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.04 1.67 5.87 44.99 0.26 1.93 16 18 C -0.17 -5.99 9.80 30.62 0.30 -5.69 16 19 C -0.18 -5.50 10.36 30.62 0.32 -5.19 16 20 C -0.26 -7.94 11.07 66.78 0.74 -7.21 16 21 S 0.15 3.95 23.18 -56.49 -1.31 2.64 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 3.62 7.56 -2.39 -0.02 3.60 16 26 H 0.13 3.91 7.99 -2.39 -0.02 3.89 16 27 H 0.26 15.79 8.32 -92.71 -0.77 15.02 16 28 H 0.13 4.17 6.96 -2.39 -0.02 4.15 16 29 H 0.08 3.17 6.73 -2.39 -0.02 3.15 16 30 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.21 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -82.12 297.94 3.62 -78.51 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.12 Total: 15.34 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.04 Total: -6.89 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.22 Total: -103.22 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.04 Total: -36.15 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -82.12 3.62 -78.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.996 kcal (2) G-P(sol) polarization free energy of solvation -82.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds