Wall clock time and date at job start Mon Mar 30 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.80995 * 109.46994 * 2 1 4 4 C 1.76197 * 99.99996 * 179.97438 * 3 2 1 5 5 C 1.39498 * 119.54052 * 179.97438 * 4 3 2 6 6 C 1.36791 * 119.38360 * 179.97438 * 5 4 3 7 7 C 1.40450 * 118.49444 * 0.02562 * 6 5 4 8 8 C 1.47397 * 120.47568 * 180.02562 * 7 6 5 9 9 O 1.21631 * 120.00212 * 220.82292 * 8 7 6 10 10 N 1.34772 * 119.99700 * 40.82286 * 8 7 6 11 11 C 1.46500 * 120.00517 * 5.45932 * 10 8 7 12 12 C 1.36913 * 119.99940 * 185.45975 * 10 8 7 13 13 H 1.07999 * 119.99939 * 337.37910 * 12 10 8 14 14 C 1.39016 * 120.00344 * 157.37603 * 12 10 8 15 15 N 1.31391 * 119.99811 * 356.69858 * 14 12 10 16 16 Si 1.86798 * 120.00272 * 176.70365 * 14 12 10 17 17 H 1.48491 * 109.47346 * 89.99642 * 16 14 12 18 18 H 1.48497 * 109.46938 * 210.00112 * 16 14 12 19 19 H 1.48508 * 109.46832 * 329.99689 * 16 14 12 20 20 C 1.39656 * 119.04914 * 359.97438 * 7 6 5 21 21 N 1.31639 * 120.51106 * 359.97438 * 20 7 6 22 22 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47286 * 300.00086 * 1 2 3 24 24 H 1.09001 * 109.47337 * 59.99988 * 1 2 3 25 25 H 1.09005 * 109.47125 * 240.00049 * 2 1 3 26 26 H 1.08995 * 109.46910 * 119.99895 * 2 1 3 27 27 H 1.08001 * 120.29937 * 359.97438 * 5 4 3 28 28 H 1.08006 * 120.74954 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.46744 * 25.48868 * 11 10 8 30 30 H 1.08998 * 109.47477 * 145.49563 * 11 10 8 31 31 H 1.08998 * 109.47042 * 265.49502 * 11 10 8 32 32 H 0.96995 * 120.00097 * 180.02562 * 15 14 12 33 33 H 1.08000 * 119.74321 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 0.0008 5 6 4.7494 2.5005 0.0004 6 6 6.0980 2.2717 0.0016 7 6 6.5522 0.9427 0.0025 8 6 7.9960 0.6461 0.0043 9 8 8.4322 -0.2573 -0.6835 10 7 8.8329 1.3759 0.7681 11 6 8.2960 2.3836 1.6861 12 6 10.1848 1.1756 0.6862 13 1 10.5702 0.2360 0.3190 14 6 11.0614 2.1818 1.0757 15 7 10.5939 3.3477 1.4610 16 14 12.9041 1.8763 1.0512 17 1 13.4512 2.2554 -0.2762 18 1 13.5553 2.6930 2.1067 19 1 13.1706 0.4373 1.3039 20 6 5.6162 -0.0938 0.0028 21 7 4.3266 0.1703 0.0027 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3678 3.5109 -0.0007 28 1 6.7977 3.0945 0.0018 29 1 7.2757 2.1171 1.9617 30 1 8.9153 2.4257 2.5820 31 1 8.2976 3.3579 1.1973 32 1 11.2055 4.0498 1.7324 33 1 5.9530 -1.1199 0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068766393.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:53 Heat of formation + Delta-G solvation = 5.837851 kcal Electronic energy + Delta-G solvation = -17423.504533 eV Core-core repulsion = 14575.859345 eV Total energy + Delta-G solvation = -2847.645187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02304 -38.00757 -34.83643 -33.11964 -32.53106 -31.52275 -30.86126 -26.52792 -25.37271 -23.99284 -23.36126 -22.79027 -19.68265 -17.74490 -17.13053 -16.52490 -15.99679 -15.54172 -15.03297 -14.96770 -14.24846 -14.12871 -13.95678 -13.63132 -13.25854 -13.01536 -12.49446 -12.27484 -11.84848 -11.65407 -11.48349 -11.44589 -11.22406 -10.96468 -10.48660 -10.48131 -10.43221 -9.57339 -9.55029 -9.49465 -9.12656 -8.56257 -7.85618 -7.46762 -6.44261 -3.99824 1.00829 1.51963 1.56792 2.18877 3.10316 3.18762 3.23975 3.59070 4.02282 4.18350 4.65446 4.78672 4.84319 4.86920 5.02394 5.19655 5.23098 5.31210 5.37017 5.62224 5.64156 5.67633 5.89388 5.94135 6.23540 6.24885 6.47025 6.78947 6.81472 7.15564 7.42889 7.88037 8.01691 8.34845 9.03872 9.25693 9.82446 10.56847 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.004097 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.370994 B = 6833.023804 C = 7209.230014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 S -0.087 6.087 4 C 0.113 3.887 5 C -0.154 4.154 6 C -0.038 4.038 7 C -0.142 4.142 8 C 0.477 3.523 9 O -0.586 6.586 10 N -0.430 5.430 11 C 0.110 3.890 12 C -0.303 4.303 13 H 0.103 0.897 14 C 0.031 3.969 15 N -0.880 5.880 16 Si 0.934 3.066 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.147 3.853 21 N -0.493 5.493 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.270 0.730 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 0.025 0.551 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.247 4.247 3 S 0.152 5.848 4 C -0.136 4.136 5 C -0.180 4.180 6 C -0.066 4.066 7 C -0.150 4.150 8 C 0.265 3.735 9 O -0.472 6.472 10 N -0.146 5.146 11 C -0.034 4.034 12 C -0.431 4.431 13 H 0.121 0.879 14 C -0.173 4.173 15 N -0.519 5.519 16 Si 0.760 3.240 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.014 4.014 21 N -0.205 5.205 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.872 0.101 0.329 15.875 hybrid contribution 2.305 -0.287 0.097 2.325 sum -13.566 -0.186 0.426 13.574 Atomic orbital electron populations 1.21590 0.92669 1.02816 1.02828 1.23329 0.98874 0.95559 1.06967 1.85536 0.94940 1.12240 1.92101 1.23004 0.98237 0.92010 1.00384 1.21295 0.93217 0.99140 1.04327 1.21684 0.95262 0.97020 0.92618 1.21308 0.96785 0.94278 1.02647 1.17643 0.84498 0.87038 0.84299 1.90636 1.77302 1.33505 1.45786 1.43541 1.06169 1.32178 1.32744 1.21780 0.94840 0.91781 0.94987 1.19771 0.79783 1.01300 1.42201 0.87894 1.25444 1.01039 0.94436 0.96354 1.69986 1.35632 1.03406 1.42911 0.85802 0.81377 0.78713 0.78115 1.20120 1.20734 1.19251 1.22806 0.86524 0.99670 0.92390 1.67991 1.17068 1.19903 1.15579 0.90916 0.91836 0.91855 0.88972 0.88959 0.84468 0.83431 0.95485 0.90668 0.91998 0.91944 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.10 -1.07 5.54 37.16 0.21 -0.86 16 3 S -0.09 -1.09 22.05 -107.50 -2.37 -3.46 16 4 C 0.11 1.77 6.98 -16.71 -0.12 1.66 16 5 C -0.15 -2.36 9.77 -39.64 -0.39 -2.75 16 6 C -0.04 -0.67 7.76 -39.27 -0.30 -0.97 16 7 C -0.14 -2.87 4.97 -104.81 -0.52 -3.39 16 8 C 0.48 11.80 7.25 -12.53 -0.09 11.71 16 9 O -0.59 -16.38 16.63 5.25 0.09 -16.29 16 10 N -0.43 -10.90 3.02 -123.44 -0.37 -11.28 16 11 C 0.11 2.41 7.18 59.85 0.43 2.84 16 12 C -0.30 -8.26 9.34 -14.99 -0.14 -8.40 16 13 H 0.10 2.93 7.34 -52.49 -0.39 2.54 16 14 C 0.03 0.79 5.28 -17.45 -0.09 0.70 16 15 N -0.88 -22.42 10.22 55.50 0.57 -21.85 16 16 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 C 0.15 2.71 10.82 -17.11 -0.19 2.53 16 21 N -0.49 -8.37 9.10 -11.65 -0.11 -8.48 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 1.06 8.12 -51.91 -0.42 0.64 16 26 H 0.09 1.05 8.12 -51.92 -0.42 0.63 16 27 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.15 2.54 6.17 -52.48 -0.32 2.22 16 29 H 0.03 0.52 5.98 -51.93 -0.31 0.21 16 30 H 0.07 1.75 6.99 -51.93 -0.36 1.39 16 31 H 0.06 1.37 6.52 -51.93 -0.34 1.03 16 32 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.16 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -29.72 294.77 -7.42 -37.14 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -3.81 Total: 2.28 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.83 Total: 2.32 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.09 Total: -41.60 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.09 Total: -16.29 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.37 Total: -3.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.72 -7.42 -37.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068766393.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.979 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds