Wall clock time and date at job start Mon Mar 30 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.80995 * 109.46994 * 2 1 4 4 C 1.76197 * 99.99996 * 179.97438 * 3 2 1 5 5 C 1.39498 * 119.54052 * 179.97438 * 4 3 2 6 6 C 1.36791 * 119.38360 * 179.97438 * 5 4 3 7 7 C 1.40450 * 118.49444 * 0.02562 * 6 5 4 8 8 C 1.47397 * 120.47568 * 180.02562 * 7 6 5 9 9 O 1.21631 * 120.00212 * 220.82292 * 8 7 6 10 10 N 1.34772 * 119.99700 * 40.82286 * 8 7 6 11 11 C 1.46500 * 120.00517 * 5.45932 * 10 8 7 12 12 C 1.36913 * 119.99940 * 185.45975 * 10 8 7 13 13 H 1.07999 * 119.99939 * 337.37910 * 12 10 8 14 14 C 1.39016 * 120.00344 * 157.37603 * 12 10 8 15 15 N 1.31391 * 119.99811 * 356.69858 * 14 12 10 16 16 Si 1.86798 * 120.00272 * 176.70365 * 14 12 10 17 17 H 1.48491 * 109.47346 * 89.99642 * 16 14 12 18 18 H 1.48497 * 109.46938 * 210.00112 * 16 14 12 19 19 H 1.48508 * 109.46832 * 329.99689 * 16 14 12 20 20 C 1.39656 * 119.04914 * 359.97438 * 7 6 5 21 21 N 1.31639 * 120.51106 * 359.97438 * 20 7 6 22 22 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47286 * 300.00086 * 1 2 3 24 24 H 1.09001 * 109.47337 * 59.99988 * 1 2 3 25 25 H 1.09005 * 109.47125 * 240.00049 * 2 1 3 26 26 H 1.08995 * 109.46910 * 119.99895 * 2 1 3 27 27 H 1.08001 * 120.29937 * 359.97438 * 5 4 3 28 28 H 1.08006 * 120.74954 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.46744 * 25.48868 * 11 10 8 30 30 H 1.08998 * 109.47477 * 145.49563 * 11 10 8 31 31 H 1.08998 * 109.47042 * 265.49502 * 11 10 8 32 32 H 0.96995 * 120.00097 * 180.02562 * 15 14 12 33 33 H 1.08000 * 119.74321 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 0.0008 5 6 4.7494 2.5005 0.0004 6 6 6.0980 2.2717 0.0016 7 6 6.5522 0.9427 0.0025 8 6 7.9960 0.6461 0.0043 9 8 8.4322 -0.2573 -0.6835 10 7 8.8329 1.3759 0.7681 11 6 8.2960 2.3836 1.6861 12 6 10.1848 1.1756 0.6862 13 1 10.5702 0.2360 0.3190 14 6 11.0614 2.1818 1.0757 15 7 10.5939 3.3477 1.4610 16 14 12.9041 1.8763 1.0512 17 1 13.4512 2.2554 -0.2762 18 1 13.5553 2.6930 2.1067 19 1 13.1706 0.4373 1.3039 20 6 5.6162 -0.0938 0.0028 21 7 4.3266 0.1703 0.0027 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3678 3.5109 -0.0007 28 1 6.7977 3.0945 0.0018 29 1 7.2757 2.1171 1.9617 30 1 8.9153 2.4257 2.5820 31 1 8.2976 3.3579 1.1973 32 1 11.2055 4.0498 1.7324 33 1 5.9530 -1.1199 0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068766393.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:52 Heat of formation + Delta-G solvation = -11.843050 kcal Electronic energy + Delta-G solvation = -17424.271234 eV Core-core repulsion = 14575.859345 eV Total energy + Delta-G solvation = -2848.411889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53066 -39.77299 -36.80970 -34.36560 -33.71635 -33.15020 -32.35321 -28.39411 -27.08541 -25.33087 -24.72975 -23.92004 -21.41634 -19.13324 -18.91361 -18.26737 -17.44985 -16.97576 -16.48619 -16.04538 -15.83858 -15.70793 -15.42925 -14.99784 -14.76311 -14.48373 -13.89708 -13.56711 -13.35947 -13.18720 -13.03299 -12.72403 -12.52953 -12.49470 -12.33822 -12.12991 -11.44558 -11.11104 -11.02456 -10.92571 -10.81503 -10.41970 -9.82143 -8.58799 -8.39047 -6.05330 -0.40466 0.16357 0.45553 1.18399 1.37173 1.40950 1.53180 1.90478 2.22954 2.61082 2.94670 3.06144 3.41912 3.79955 3.88153 3.98428 4.05110 4.05966 4.13957 4.53027 4.56824 4.61484 4.84876 4.93347 4.96042 5.00367 5.07187 5.24589 5.31355 5.38083 5.42098 5.99687 6.38333 6.55509 7.05734 7.32197 7.88467 8.60566 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.004097 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.370994 B = 6833.023804 C = 7209.230014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 S -0.052 6.052 4 C 0.108 3.892 5 C -0.147 4.147 6 C -0.033 4.033 7 C -0.170 4.170 8 C 0.473 3.527 9 O -0.631 6.631 10 N -0.444 5.444 11 C 0.124 3.876 12 C -0.347 4.347 13 H 0.076 0.924 14 C 0.002 3.998 15 N -0.890 5.890 16 Si 0.995 3.005 17 H -0.274 1.274 18 H -0.265 1.265 19 H -0.271 1.271 20 C 0.148 3.852 21 N -0.495 5.495 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.277 0.723 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 1.242 0.920 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.250 4.250 3 S 0.188 5.812 4 C -0.141 4.141 5 C -0.172 4.172 6 C -0.061 4.061 7 C -0.179 4.179 8 C 0.262 3.738 9 O -0.521 6.521 10 N -0.160 5.160 11 C -0.018 4.018 12 C -0.475 4.475 13 H 0.094 0.906 14 C -0.200 4.200 15 N -0.528 5.528 16 Si 0.818 3.182 17 H -0.199 1.199 18 H -0.189 1.189 19 H -0.196 1.196 20 C -0.012 4.012 21 N -0.208 5.208 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.190 0.810 28 H 0.166 0.834 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.934 1.352 0.720 18.000 hybrid contribution 2.689 -0.645 -0.036 2.765 sum -15.246 0.707 0.684 15.278 Atomic orbital electron populations 1.21601 0.90213 1.04184 1.03427 1.23479 1.00897 0.94245 1.06424 1.85491 0.91472 1.13382 1.90873 1.23730 1.00723 0.91661 0.97974 1.21615 0.92002 1.00738 1.02834 1.21683 0.96499 0.95666 0.92228 1.20933 0.94096 0.96134 1.06716 1.18314 0.86374 0.85925 0.83142 1.90576 1.78789 1.35279 1.47426 1.43734 1.05878 1.32939 1.33432 1.21672 0.95613 0.90986 0.93541 1.19725 0.81382 1.01366 1.45020 0.90567 1.26160 1.04759 0.93953 0.95169 1.70039 1.37038 1.03610 1.42100 0.84906 0.76336 0.78517 0.78432 1.19916 1.18941 1.19610 1.22763 0.87037 0.99321 0.92093 1.68101 1.15846 1.20754 1.16126 0.89211 0.91182 0.91258 0.89620 0.89475 0.81011 0.83363 0.92944 0.92306 0.92115 0.91259 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.92 71.98 0.71 -0.99 16 2 C -0.10 -1.93 5.54 71.98 0.40 -1.53 16 3 S -0.05 -1.13 22.05 -56.49 -1.25 -2.38 16 4 C 0.11 3.14 6.98 84.87 0.59 3.73 16 5 C -0.15 -4.11 9.77 22.23 0.22 -3.89 16 6 C -0.03 -1.13 7.76 22.47 0.17 -0.95 16 7 C -0.17 -6.96 4.97 -19.98 -0.10 -7.06 16 8 C 0.47 24.36 7.25 86.66 0.63 24.99 16 9 O -0.63 -37.24 16.63 -4.13 -0.07 -37.31 16 10 N -0.44 -23.31 3.02 -662.68 -2.00 -25.31 16 11 C 0.12 5.54 7.18 127.77 0.92 6.46 16 12 C -0.35 -19.72 9.34 84.09 0.79 -18.94 16 13 H 0.08 4.62 7.34 -2.91 -0.02 4.60 16 14 C 0.00 0.12 5.28 84.95 0.45 0.56 16 15 N -0.89 -45.28 10.22 21.68 0.22 -45.05 16 16 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.15 5.51 10.82 85.06 0.92 6.43 16 21 N -0.50 -16.20 9.10 -190.76 -1.74 -17.94 16 22 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 26 H 0.09 1.78 8.12 -2.40 -0.02 1.76 16 27 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.15 4.99 6.17 -2.91 -0.02 4.97 16 29 H 0.05 2.02 5.98 -2.39 -0.01 2.01 16 30 H 0.06 2.77 6.99 -2.39 -0.02 2.76 16 31 H 0.06 2.68 6.52 -2.39 -0.02 2.67 16 32 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 33 H 0.16 5.91 8.06 -2.91 -0.02 5.88 16 Total: -1.00 -65.67 294.77 4.02 -61.66 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.12 Total: 13.83 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.70 Total: 8.81 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -3.51 Total: -88.30 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.07 Total: -37.31 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.25 Total: -2.38 kcal Total: -65.67 4.02 -61.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068766393.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.813 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds