Wall clock time and date at job start Mon Mar 30 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.46985 * 2 1 4 4 S 1.81391 * 109.47444 * 239.99714 * 2 1 3 5 5 C 1.76196 * 103.00127 * 64.99768 * 4 2 1 6 6 C 1.39198 * 119.71143 * 180.02562 * 5 4 2 7 7 C 1.38275 * 119.09369 * 180.02562 * 6 5 4 8 8 C 1.38909 * 118.51307 * 359.97438 * 7 6 5 9 9 C 1.38034 * 119.33739 * 0.25569 * 8 7 6 10 10 N 1.31970 * 120.86326 * 359.44950 * 9 8 7 11 11 C 1.50704 * 109.47200 * 119.99376 * 2 1 3 12 12 O 1.21290 * 119.99995 * 99.99958 * 11 2 1 13 13 N 1.34776 * 120.00350 * 280.00471 * 11 2 1 14 14 C 1.46504 * 119.99984 * 359.97438 * 13 11 2 15 15 C 1.37095 * 120.00345 * 179.97438 * 13 11 2 16 16 H 1.08006 * 119.99776 * 21.58110 * 15 13 11 17 17 C 1.38952 * 120.00110 * 201.57376 * 15 13 11 18 18 N 1.31408 * 120.00098 * 15.75602 * 17 15 13 19 19 Si 1.86800 * 119.99941 * 195.75659 * 17 15 13 20 20 H 1.48499 * 109.47253 * 59.99947 * 19 17 15 21 21 H 1.48501 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47046 * 299.99922 * 19 17 15 23 23 H 1.09004 * 109.47122 * 60.00468 * 1 2 3 24 24 H 1.09000 * 109.47286 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47263 * 300.00348 * 1 2 3 26 26 H 1.07994 * 120.45689 * 359.97438 * 6 5 4 27 27 H 1.08001 * 120.74347 * 180.02562 * 7 6 5 28 28 H 1.07990 * 120.33299 * 179.97438 * 8 7 6 29 29 H 1.08000 * 119.57117 * 179.72743 * 9 8 7 30 30 H 1.08989 * 109.47457 * 87.93293 * 14 13 11 31 31 H 1.08997 * 109.47224 * 207.94463 * 14 13 11 32 32 H 1.09005 * 109.47021 * 327.93590 * 14 13 11 33 33 H 0.96999 * 120.00101 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4810 5 6 1.5827 0.1844 -2.7921 6 6 1.8672 -0.1584 -4.1109 7 6 1.4284 0.6669 -5.1298 8 6 0.7164 1.8119 -4.7956 9 6 0.4739 2.0935 -3.4663 10 7 0.8998 1.2849 -2.5143 11 6 2.0323 -0.7103 1.2306 12 8 2.4064 -1.8616 1.1560 13 7 2.0658 -0.0662 2.4140 14 6 1.6143 1.3246 2.5041 15 6 2.5223 -0.7126 3.5336 16 1 3.1639 -1.5758 3.4349 17 6 2.1597 -0.2570 4.7952 18 7 1.1538 0.5780 4.9282 19 14 3.1021 -0.8316 6.3022 20 1 4.5281 -0.4371 6.1745 21 1 2.5218 -0.2057 7.5174 22 1 3.0054 -2.3093 6.4128 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.4238 -1.0563 -4.3352 27 1 1.6339 0.4263 -6.1624 28 1 0.3601 2.4774 -5.5679 29 1 -0.0755 2.9850 -3.2020 30 1 0.5411 1.3468 2.6927 31 1 2.1371 1.8242 3.3197 32 1 1.8291 1.8377 1.5667 33 1 0.9004 0.8958 5.8090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084923531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:45 Heat of formation + Delta-G solvation = 12.903483 kcal Electronic energy + Delta-G solvation = -17587.849115 eV Core-core repulsion = 14740.510316 eV Total energy + Delta-G solvation = -2847.338799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85961 -38.58542 -34.73525 -33.02186 -32.23251 -31.27322 -31.08883 -26.34430 -24.98508 -23.70045 -23.60829 -23.14671 -19.29185 -17.87925 -16.89957 -16.32255 -16.22656 -16.00588 -14.92918 -14.63187 -14.27369 -14.16231 -13.93298 -13.48617 -13.17592 -12.75846 -12.55096 -12.08701 -11.67257 -11.46652 -11.33930 -11.24476 -11.11865 -10.84973 -10.42083 -10.31328 -10.02895 -9.75195 -9.67899 -9.45115 -9.04346 -8.45134 -7.73811 -7.27057 -6.37391 -3.90429 1.00804 1.23062 1.72624 2.60440 3.17547 3.23511 3.27916 3.70669 3.81839 4.12073 4.54095 4.75972 4.80639 5.04385 5.06783 5.09915 5.22750 5.50656 5.55974 5.65917 5.74940 5.93016 6.10907 6.16504 6.28351 6.36674 6.52771 6.65474 6.81572 7.16406 7.53534 7.80446 8.05209 8.42206 9.11957 9.35266 9.90075 10.67185 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.045914 B = 0.004575 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.690450 B = 6119.330467 C = 6522.504311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.106 0.894 4 S -0.009 6.009 5 C 0.114 3.886 6 C -0.158 4.158 7 C -0.060 4.060 8 C -0.194 4.194 9 C 0.113 3.887 10 N -0.489 5.489 11 C 0.458 3.542 12 O -0.578 6.578 13 N -0.433 5.433 14 C 0.109 3.891 15 C -0.308 4.308 16 H 0.101 0.899 17 C 0.033 3.967 18 N -0.877 5.877 19 Si 0.928 3.072 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 5.346 -15.501 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.215 4.215 3 H 0.124 0.876 4 S 0.234 5.766 5 C -0.134 4.134 6 C -0.185 4.185 7 C -0.087 4.087 8 C -0.218 4.218 9 C -0.047 4.047 10 N -0.202 5.202 11 C 0.244 3.756 12 O -0.463 6.463 13 N -0.151 5.151 14 C -0.035 4.035 15 C -0.436 4.436 16 H 0.119 0.881 17 C -0.171 4.171 18 N -0.516 5.516 19 Si 0.754 3.246 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.297 4.018 -14.358 14.966 hybrid contribution -0.323 1.059 -0.021 1.107 sum -1.620 5.077 -14.379 15.335 Atomic orbital electron populations 1.21914 0.91336 1.02882 1.03319 1.23482 1.00985 1.02990 0.94062 0.87553 1.86111 1.67005 1.28690 0.94766 1.23758 0.96517 0.95867 0.97301 1.21632 1.03329 1.01853 0.91682 1.21443 0.94562 0.93403 0.99317 1.21988 1.02705 0.99193 0.97896 1.22761 0.95495 0.97412 0.89016 1.68221 1.11407 1.03803 1.36785 1.19216 0.85420 0.86834 0.84094 1.90544 1.53229 1.17393 1.85131 1.43475 1.54533 1.10518 1.06579 1.21590 1.00669 0.82621 0.98646 1.19658 1.27360 1.14046 0.82570 0.88141 1.25339 0.95581 0.97042 0.99152 1.70010 1.24151 1.32786 1.24639 0.85976 0.79621 0.79173 0.79830 1.19820 1.20901 1.19687 0.90727 0.92062 0.91161 0.84489 0.84761 0.85052 0.82769 0.92486 0.90732 0.95283 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.94 37.15 0.33 -2.16 16 2 C -0.08 -1.67 1.96 -27.89 -0.05 -1.73 16 3 H 0.11 2.06 6.31 -51.92 -0.33 1.74 16 4 S -0.01 -0.18 20.58 -107.50 -2.21 -2.39 16 5 C 0.11 1.77 6.85 -16.92 -0.12 1.65 16 6 C -0.16 -1.98 9.84 -39.21 -0.39 -2.36 16 7 C -0.06 -0.59 10.17 -39.32 -0.40 -0.99 16 8 C -0.19 -1.86 10.11 -39.41 -0.40 -2.26 16 9 C 0.11 1.32 11.17 -17.57 -0.20 1.12 16 10 N -0.49 -7.35 7.45 -12.11 -0.09 -7.44 16 11 C 0.46 11.54 6.81 -10.98 -0.07 11.47 16 12 O -0.58 -16.42 15.73 5.55 0.09 -16.33 16 13 N -0.43 -11.28 3.02 -122.19 -0.37 -11.65 16 14 C 0.11 2.45 7.85 59.85 0.47 2.92 16 15 C -0.31 -8.66 9.28 -14.93 -0.14 -8.80 16 16 H 0.10 2.95 7.41 -52.48 -0.39 2.56 16 17 C 0.03 0.87 5.00 -17.47 -0.09 0.78 16 18 N -0.88 -23.26 10.83 55.50 0.60 -22.66 16 19 Si 0.93 20.70 29.58 -169.99 -5.03 15.67 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.07 1.25 5.96 -51.93 -0.31 0.94 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 1.30 6.87 -51.93 -0.36 0.95 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.06 1.31 7.18 -51.94 -0.37 0.94 16 31 H 0.07 1.76 6.83 -51.93 -0.35 1.41 16 32 H 0.03 0.56 6.03 -51.93 -0.31 0.25 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -31.64 291.75 -7.34 -38.97 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.67 Total: 1.80 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.05 Total: -0.36 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.14 Total: -41.75 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.21 Total: -2.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.64 -7.34 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084923531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.878 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds