Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46795 * 2 1 4 4 S 1.81393 * 109.47073 * 119.99982 * 2 1 3 5 5 C 1.76201 * 103.00302 * 295.00314 * 4 2 1 6 6 C 1.39198 * 119.71547 * 179.97438 * 5 4 2 7 7 C 1.38268 * 119.09703 * 179.76433 * 6 5 4 8 8 C 1.38918 * 118.50994 * 0.52651 * 7 6 5 9 9 C 1.38030 * 119.33831 * 359.45297 * 8 7 6 10 10 N 1.31966 * 120.85982 * 0.30210 * 9 8 7 11 11 C 1.50693 * 109.47238 * 240.00527 * 2 1 3 12 12 O 1.21304 * 119.99716 * 264.99821 * 11 2 1 13 13 N 1.34768 * 120.00514 * 84.99994 * 11 2 1 14 14 C 1.46500 * 119.99851 * 359.97438 * 13 11 2 15 15 C 1.37098 * 120.00270 * 180.02562 * 13 11 2 16 16 H 1.08002 * 119.99711 * 322.81089 * 15 13 11 17 17 C 1.38951 * 120.00010 * 142.81541 * 15 13 11 18 18 N 1.31418 * 119.99575 * 158.36111 * 17 15 13 19 19 Si 1.86802 * 120.00237 * 338.35871 * 17 15 13 20 20 H 1.48500 * 109.46900 * 95.72058 * 19 17 15 21 21 H 1.48497 * 109.47050 * 215.71919 * 19 17 15 22 22 H 1.48498 * 109.47007 * 335.72410 * 19 17 15 23 23 H 1.08993 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47173 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.46747 * 59.99744 * 1 2 3 26 26 H 1.08006 * 120.45071 * 0.02562 * 6 5 4 27 27 H 1.08001 * 120.74970 * 180.25193 * 7 6 5 28 28 H 1.07997 * 120.33020 * 179.72985 * 8 7 6 29 29 H 1.07998 * 119.57064 * 180.27898 * 9 8 7 30 30 H 1.09004 * 109.46981 * 85.13392 * 14 13 11 31 31 H 1.09000 * 109.47343 * 205.13498 * 14 13 11 32 32 H 1.08998 * 109.47194 * 325.13545 * 14 13 11 33 33 H 0.97001 * 119.99602 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5827 0.1846 2.7922 6 6 1.8671 -0.1582 4.1110 7 6 1.4321 0.6694 5.1296 8 6 0.7146 1.8111 4.7956 9 6 0.4685 2.0905 3.4665 10 7 0.9002 1.2853 2.5143 11 6 2.0324 -0.7103 -1.2305 12 8 2.3210 -1.8872 -1.1760 13 7 2.1612 -0.0379 -2.3913 14 6 1.8122 1.3834 -2.4572 15 6 2.6177 -0.6843 -3.5109 16 1 3.3897 -1.4346 -3.4241 17 6 2.0873 -0.3740 -4.7571 18 7 2.7698 -0.6438 -5.8473 19 14 0.4043 0.4267 -4.8829 20 1 0.5636 1.8988 -4.9948 21 1 -0.3000 -0.0878 -6.0848 22 1 -0.3886 0.1055 -3.6691 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 2.4238 -1.0562 4.3353 27 1 1.6414 0.4313 6.1621 28 1 0.3569 2.4759 5.5680 29 1 -0.0850 2.9795 3.2024 30 1 2.6657 1.9821 -2.1390 31 1 1.5464 1.6452 -3.4814 32 1 0.9651 1.5803 -1.8003 33 1 2.3994 -0.4275 -6.7173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084923532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -2.316373 kcal Electronic energy + Delta-G solvation = -17679.919050 eV Core-core repulsion = 14831.920269 eV Total energy + Delta-G solvation = -2847.998781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80146 -40.74602 -36.85837 -34.72863 -33.82869 -33.12238 -32.11299 -28.28667 -27.38395 -25.05019 -24.62030 -24.35462 -21.03511 -19.21207 -19.00992 -18.23208 -17.32405 -17.19797 -17.01368 -16.40478 -15.90745 -15.45771 -15.25125 -14.99397 -14.55483 -14.50177 -14.31393 -13.96658 -13.87468 -13.26321 -13.21972 -12.94741 -12.69339 -12.47037 -12.31162 -11.86175 -11.27021 -11.12150 -10.95170 -10.69996 -10.54488 -10.41974 -9.81829 -8.61330 -8.57398 -6.21888 0.07490 0.31813 0.36098 1.16162 1.19839 1.30744 1.43305 1.80195 2.13752 2.59156 2.79435 2.85944 3.61220 3.68672 3.87584 4.03268 4.03827 4.19441 4.20784 4.25002 4.45107 4.46505 4.62500 4.69293 4.76934 4.83805 5.09676 5.13921 5.28990 5.44158 5.75170 5.95860 6.42545 6.81880 6.83768 7.16052 7.69988 8.59460 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038938 B = 0.005128 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.911863 B = 5459.286828 C = 5901.817359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 H 0.123 0.877 4 S -0.063 6.063 5 C 0.095 3.905 6 C -0.162 4.162 7 C -0.055 4.055 8 C -0.173 4.173 9 C 0.100 3.900 10 N -0.514 5.514 11 C 0.471 3.529 12 O -0.601 6.601 13 N -0.470 5.470 14 C 0.052 3.948 15 C -0.341 4.341 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.905 5.905 19 Si 0.951 3.049 20 H -0.235 1.235 21 H -0.286 1.286 22 H -0.256 1.256 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.184 0.816 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 11.151 21.464 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.205 4.205 3 H 0.141 0.859 4 S 0.179 5.821 5 C -0.152 4.152 6 C -0.189 4.189 7 C -0.082 4.082 8 C -0.195 4.195 9 C -0.060 4.060 10 N -0.227 5.227 11 C 0.259 3.741 12 O -0.486 6.486 13 N -0.191 5.191 14 C -0.089 4.089 15 C -0.469 4.469 16 H 0.064 0.936 17 C -0.187 4.187 18 N -0.542 5.542 19 Si 0.773 3.227 20 H -0.160 1.160 21 H -0.213 1.213 22 H -0.180 1.180 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.161 0.839 27 H 0.190 0.810 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.582 9.719 20.288 23.739 hybrid contribution -0.585 0.650 -0.125 0.883 sum -8.167 10.369 20.163 24.099 Atomic orbital electron populations 1.21937 0.89534 1.02818 1.04529 1.23242 1.02060 1.02931 0.92305 0.85947 1.86240 1.68994 1.31059 0.95809 1.23272 0.99157 0.96525 0.96273 1.21854 1.03254 1.02685 0.91124 1.21930 0.93257 0.92615 1.00383 1.22502 1.00072 0.98855 0.98098 1.23331 0.95473 0.97711 0.89480 1.68027 1.11997 1.04106 1.38605 1.20314 0.81714 0.86677 0.85436 1.90556 1.54542 1.17951 1.85529 1.43662 1.58433 1.08807 1.08224 1.22359 1.02141 0.81472 1.02962 1.18682 1.19966 1.23643 0.84611 0.93617 1.26187 1.01485 0.97257 0.93799 1.69860 1.38335 1.46796 0.99165 0.85815 0.78671 0.79721 0.78499 1.15987 1.21286 1.18028 0.92995 0.88193 0.90864 0.83865 0.81001 0.81023 0.79943 0.90585 0.91781 0.88845 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.81 71.99 0.63 -3.58 16 2 C -0.07 -2.75 1.85 29.85 0.06 -2.69 16 3 H 0.12 4.15 6.99 -2.39 -0.02 4.14 16 4 S -0.06 -2.27 20.64 -56.49 -1.17 -3.43 16 5 C 0.10 2.65 6.85 84.83 0.58 3.23 16 6 C -0.16 -3.47 9.84 22.51 0.22 -3.25 16 7 C -0.05 -0.77 10.17 22.44 0.23 -0.54 16 8 C -0.17 -2.15 10.11 22.38 0.23 -1.92 16 9 C 0.10 1.72 11.17 84.62 0.95 2.66 16 10 N -0.51 -13.04 7.45 -192.21 -1.43 -14.47 16 11 C 0.47 23.36 6.75 87.66 0.59 23.95 16 12 O -0.60 -35.41 16.00 -3.10 -0.05 -35.46 16 13 N -0.47 -23.69 2.59 -658.89 -1.70 -25.40 16 14 C 0.05 2.01 8.36 127.77 1.07 3.07 16 15 C -0.34 -20.60 9.37 84.04 0.79 -19.81 16 16 H 0.05 3.23 7.90 -2.91 -0.02 3.21 16 17 C 0.02 0.90 5.29 84.93 0.45 1.35 16 18 N -0.90 -54.12 13.96 21.66 0.30 -53.82 16 19 Si 0.95 41.67 24.97 68.60 1.71 43.38 16 20 H -0.24 -8.86 6.69 99.48 0.67 -8.20 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.10 2.84 5.96 -2.39 -0.01 2.82 16 25 H 0.07 2.25 6.73 -2.39 -0.02 2.23 16 26 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 28 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 2.50 3.42 -2.39 -0.01 2.49 16 32 H 0.09 2.89 5.36 -2.39 -0.01 2.88 16 33 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -78.11 288.27 4.54 -73.58 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.09 Total: 13.16 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.79 Total: 2.47 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.83 Total: -93.69 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.05 Total: -35.46 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.71 Total: 43.38 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -1.17 Total: -3.43 kcal Total: -78.11 4.54 -73.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084923532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.259 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds