Wall clock time and date at job start Mon Mar 30 2020 01:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99569 * 2 1 4 4 H 1.48499 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47180 * 299.99755 * 3 2 1 6 6 H 1.48502 * 109.47164 * 59.99986 * 3 2 1 7 7 C 1.37873 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 173.82201 * 7 2 1 9 9 C 1.50698 * 120.00186 * 353.82258 * 7 2 1 10 10 C 1.52999 * 115.54985 * 84.90856 * 9 7 2 11 11 S 1.81000 * 109.47085 * 39.92602 * 10 9 7 12 12 C 1.76200 * 99.99740 * 179.97438 * 11 10 9 13 13 N 1.31543 * 126.45510 * 0.02562 * 12 11 10 14 14 N 1.28415 * 110.50321 * 179.97438 * 13 12 11 15 15 N 1.28906 * 110.34407 * 0.02562 * 14 13 12 16 16 N 1.35399 * 126.45400 * 179.97438 * 12 11 10 17 17 C 1.46502 * 127.38378 * 0.03949 * 16 12 11 18 18 C 1.52999 * 117.50107 * 188.60065 * 17 16 12 19 19 C 1.52999 * 117.49877 * 119.97721 * 17 16 12 20 20 C 1.53000 * 117.51629 * 230.61153 * 9 7 2 21 21 C 1.53001 * 60.00172 * 107.48004 * 20 9 7 22 22 H 0.97001 * 120.00528 * 354.97556 * 1 2 3 23 23 H 1.09006 * 109.46952 * 279.92469 * 10 9 7 24 24 H 1.09007 * 109.46998 * 159.93025 * 10 9 7 25 25 H 1.09002 * 115.54617 * 334.31028 * 17 16 12 26 26 H 1.08996 * 117.49449 * 0.02562 * 18 17 16 27 27 H 1.08998 * 117.49773 * 145.02245 * 18 17 16 28 28 H 1.08995 * 117.50050 * 214.98269 * 19 17 16 29 29 H 1.09000 * 117.49551 * 359.97438 * 19 17 16 30 30 H 1.09006 * 117.49802 * 214.96825 * 20 9 7 31 31 H 1.08998 * 117.50255 * 359.97438 * 20 9 7 32 32 H 1.09002 * 117.49522 * 252.50784 * 21 20 9 33 33 H 1.08994 * 117.51759 * 107.47858 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1966 -0.1012 9 6 1.2577 -2.4954 0.1393 10 6 0.6968 -3.0772 -1.1598 11 16 1.8981 -2.8440 -2.4935 12 6 1.0195 -3.5842 -3.8294 13 7 -0.1765 -4.1289 -3.7720 14 7 -0.5235 -4.5750 -4.9251 15 7 0.4067 -4.3538 -5.7896 16 7 1.4478 -3.6987 -5.1088 17 6 2.7232 -3.2392 -5.6643 18 6 2.8959 -3.3024 -7.1832 19 6 3.6429 -4.2918 -6.2864 20 6 1.7487 -3.4816 1.2010 21 6 0.4455 -2.7099 1.4181 22 1 -0.4851 0.8368 0.0736 23 1 -0.2325 -2.5677 -1.4146 24 1 0.5030 -4.1417 -1.0273 25 1 3.1929 -2.4082 -5.1381 26 1 2.0605 -3.6855 -7.7691 27 1 3.4794 -2.5128 -7.6566 28 1 4.7177 -4.1531 -6.1699 29 1 3.2991 -5.3262 -6.2820 30 1 1.6721 -4.5450 0.9740 31 1 2.6124 -3.1894 1.7984 32 1 0.4518 -1.9099 2.1585 33 1 -0.4885 -3.2652 1.3338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:12 Heat of formation + Delta-G solvation = 163.651267 kcal Electronic energy + Delta-G solvation = -17532.780915 eV Core-core repulsion = 14724.271782 eV Total energy + Delta-G solvation = -2808.509133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44698 -37.72929 -36.73603 -32.84208 -32.12766 -31.77422 -27.90867 -25.62565 -24.93470 -23.08494 -22.61560 -21.38205 -21.23110 -19.42374 -17.94790 -16.68175 -16.16929 -16.03956 -15.27537 -14.75384 -14.13735 -13.79575 -13.66344 -13.28664 -12.85416 -12.35478 -12.16280 -11.92467 -11.85335 -11.67066 -11.14456 -11.02579 -10.99683 -10.64877 -10.61750 -10.49211 -10.28587 -10.14438 -9.79724 -9.74155 -8.96887 -8.61658 -8.22210 -7.26003 -6.21355 -4.30030 1.20092 1.37054 2.30836 2.61482 2.86682 3.19577 3.29221 3.31367 3.39062 4.12293 4.27599 4.45843 4.57685 4.95426 5.08732 5.16916 5.30479 5.32463 5.51373 5.69936 5.75520 5.80781 5.86702 6.04853 6.32668 6.38303 6.39487 6.63023 6.71296 6.96619 7.17664 7.36095 7.70015 8.17284 8.72395 8.78837 9.37659 10.86561 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.006162 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.787592 B = 4543.099264 C = 5142.220416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.499 4.499 8 H 0.067 0.933 9 C 0.045 3.955 10 C -0.053 4.053 11 S 0.073 5.927 12 C 0.215 3.785 13 N -0.344 5.344 14 N -0.040 5.040 15 N -0.108 5.108 16 N -0.350 5.350 17 C 0.068 3.932 18 C -0.159 4.159 19 C -0.168 4.168 20 C -0.206 4.206 21 C -0.144 4.144 22 H 0.264 0.736 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -4.687 -8.148 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.042 3.958 10 C -0.202 4.202 11 S 0.303 5.697 12 C -0.167 4.167 13 N -0.202 5.202 14 N -0.036 5.036 15 N -0.096 5.096 16 N -0.148 5.148 17 C -0.036 4.036 18 C -0.197 4.197 19 C -0.207 4.207 20 C -0.243 4.243 21 C -0.184 4.184 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.174 0.826 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.025 -4.750 -8.825 12.239 hybrid contribution -0.179 0.848 0.213 0.892 sum 6.846 -3.903 -8.612 11.673 Atomic orbital electron populations 1.70010 1.05991 1.27260 1.46753 1.24966 0.94741 0.99045 0.93798 0.86607 0.80425 0.83698 0.77845 1.19420 1.20788 1.20790 1.20415 0.93009 0.88480 1.52036 0.91542 1.18527 0.98847 0.94205 0.84193 1.23445 0.99313 1.02196 0.95234 1.86296 1.21927 1.65788 0.95686 1.29027 0.95982 0.99239 0.92415 1.74989 1.10351 1.18720 1.16092 1.77757 1.18336 1.12286 0.95205 1.82264 0.93245 1.15891 1.18166 1.50816 1.15142 1.42935 1.05887 1.22093 0.82384 1.01996 0.97121 1.23366 1.03372 1.02403 0.90575 1.23487 0.98661 0.96614 1.01904 1.23117 0.98730 0.95687 1.06771 1.22570 0.92508 1.01187 1.02103 0.92656 0.88342 0.91251 0.82575 0.86992 0.86740 0.86576 0.87855 0.91304 0.89990 0.89607 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.89 12.93 55.43 0.72 -22.17 16 2 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 3 Si 0.89 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.22 7.54 -34.44 -0.26 -12.48 16 8 H 0.07 1.63 7.82 -52.48 -0.41 1.22 16 9 C 0.04 1.00 1.64 -155.66 -0.26 0.75 16 10 C -0.05 -1.12 5.35 37.16 0.20 -0.92 16 11 S 0.07 1.39 20.81 -107.50 -2.24 -0.85 16 12 C 0.21 4.11 8.15 -89.17 -0.73 3.38 16 13 N -0.34 -7.23 11.57 30.50 0.35 -6.88 16 14 N -0.04 -0.82 13.38 60.35 0.81 -0.01 16 15 N -0.11 -1.99 13.45 60.35 0.81 -1.18 16 16 N -0.35 -5.87 4.01 -54.80 -0.22 -6.09 16 17 C 0.07 0.83 6.73 -67.93 -0.46 0.37 16 18 C -0.16 -1.48 10.22 -26.73 -0.27 -1.75 16 19 C -0.17 -1.55 10.46 -26.73 -0.28 -1.83 16 20 C -0.21 -4.10 9.88 -26.73 -0.26 -4.36 16 21 C -0.14 -3.12 9.47 -26.73 -0.25 -3.37 16 22 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 23 H 0.10 2.34 8.14 -51.91 -0.42 1.91 16 24 H 0.07 1.39 7.95 -51.91 -0.41 0.97 16 25 H 0.16 1.69 8.08 -51.93 -0.42 1.28 16 26 H 0.11 1.17 7.91 -51.93 -0.41 0.76 16 27 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -28.07 307.00 -7.00 -35.07 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.17 Total: 1.14 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.67 Total: -18.29 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 2.47 Total: -36.32 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.24 Total: -0.85 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.07 -7.00 -35.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.721 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds