Wall clock time and date at job start Mon Mar 30 2020 01:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99569 * 2 1 4 4 H 1.48499 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47180 * 299.99755 * 3 2 1 6 6 H 1.48502 * 109.47164 * 59.99986 * 3 2 1 7 7 C 1.37873 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 173.82201 * 7 2 1 9 9 C 1.50698 * 120.00186 * 353.82258 * 7 2 1 10 10 C 1.52999 * 115.54985 * 84.90856 * 9 7 2 11 11 S 1.81000 * 109.47085 * 39.92602 * 10 9 7 12 12 C 1.76200 * 99.99740 * 179.97438 * 11 10 9 13 13 N 1.31543 * 126.45510 * 0.02562 * 12 11 10 14 14 N 1.28415 * 110.50321 * 179.97438 * 13 12 11 15 15 N 1.28906 * 110.34407 * 0.02562 * 14 13 12 16 16 N 1.35399 * 126.45400 * 179.97438 * 12 11 10 17 17 C 1.46502 * 127.38378 * 0.03949 * 16 12 11 18 18 C 1.52999 * 117.50107 * 188.60065 * 17 16 12 19 19 C 1.52999 * 117.49877 * 119.97721 * 17 16 12 20 20 C 1.53000 * 117.51629 * 230.61153 * 9 7 2 21 21 C 1.53001 * 60.00172 * 107.48004 * 20 9 7 22 22 H 0.97001 * 120.00528 * 354.97556 * 1 2 3 23 23 H 1.09006 * 109.46952 * 279.92469 * 10 9 7 24 24 H 1.09007 * 109.46998 * 159.93025 * 10 9 7 25 25 H 1.09002 * 115.54617 * 334.31028 * 17 16 12 26 26 H 1.08996 * 117.49449 * 0.02562 * 18 17 16 27 27 H 1.08998 * 117.49773 * 145.02245 * 18 17 16 28 28 H 1.08995 * 117.50050 * 214.98269 * 19 17 16 29 29 H 1.09000 * 117.49551 * 359.97438 * 19 17 16 30 30 H 1.09006 * 117.49802 * 214.96825 * 20 9 7 31 31 H 1.08998 * 117.50255 * 359.97438 * 20 9 7 32 32 H 1.09002 * 117.49522 * 252.50784 * 21 20 9 33 33 H 1.08994 * 117.51759 * 107.47858 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1966 -0.1012 9 6 1.2577 -2.4954 0.1393 10 6 0.6968 -3.0772 -1.1598 11 16 1.8981 -2.8440 -2.4935 12 6 1.0195 -3.5842 -3.8294 13 7 -0.1765 -4.1289 -3.7720 14 7 -0.5235 -4.5750 -4.9251 15 7 0.4067 -4.3538 -5.7896 16 7 1.4478 -3.6987 -5.1088 17 6 2.7232 -3.2392 -5.6643 18 6 2.8959 -3.3024 -7.1832 19 6 3.6429 -4.2918 -6.2864 20 6 1.7487 -3.4816 1.2010 21 6 0.4455 -2.7099 1.4181 22 1 -0.4851 0.8368 0.0736 23 1 -0.2325 -2.5677 -1.4146 24 1 0.5030 -4.1417 -1.0273 25 1 3.1929 -2.4082 -5.1381 26 1 2.0605 -3.6855 -7.7691 27 1 3.4794 -2.5128 -7.6566 28 1 4.7177 -4.1531 -6.1699 29 1 3.2991 -5.3262 -6.2820 30 1 1.6721 -4.5450 0.9740 31 1 2.6124 -3.1894 1.7984 32 1 0.4518 -1.9099 2.1585 33 1 -0.4885 -3.2652 1.3338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:12 Heat of formation + Delta-G solvation = 148.593952 kcal Electronic energy + Delta-G solvation = -17533.433849 eV Core-core repulsion = 14724.271782 eV Total energy + Delta-G solvation = -2809.162067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.91234 -38.68063 -38.43929 -34.13618 -34.01582 -33.27352 -29.59210 -27.47081 -26.28632 -24.44944 -23.44489 -22.90365 -22.59588 -21.14920 -19.25970 -18.14603 -17.73469 -17.58129 -16.60278 -16.19164 -15.75962 -15.41878 -14.96630 -14.63123 -14.39427 -14.00733 -13.54408 -13.35417 -13.16407 -12.97289 -12.81741 -12.57377 -12.33606 -12.28170 -12.04973 -11.89503 -11.78226 -11.66170 -11.46236 -10.91008 -10.74358 -10.48252 -9.94110 -8.77456 -8.11533 -6.24479 -0.22277 -0.10188 1.04513 1.07960 1.26530 1.43969 1.48887 1.57359 2.44807 2.54261 3.12342 3.19316 3.44846 3.53954 3.71147 3.78619 4.13352 4.19944 4.29621 4.35062 4.55050 4.63863 4.66226 4.68390 4.90817 4.96084 5.03948 5.08425 5.21552 5.24710 5.47606 5.65468 5.77087 6.32726 6.82761 7.29282 7.46071 8.96264 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.006162 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.787592 B = 4543.099264 C = 5142.220416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.049 4.049 11 S 0.103 5.897 12 C 0.201 3.799 13 N -0.370 5.370 14 N -0.064 5.064 15 N -0.103 5.103 16 N -0.333 5.333 17 C 0.022 3.978 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.178 4.178 21 C -0.153 4.153 22 H 0.260 0.740 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.170 0.830 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -4.922 -9.238 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.183 1.183 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.017 3.983 10 C -0.199 4.199 11 S 0.332 5.668 12 C -0.181 4.181 13 N -0.228 5.228 14 N -0.059 5.059 15 N -0.090 5.090 16 N -0.131 5.131 17 C -0.080 4.080 18 C -0.180 4.180 19 C -0.185 4.185 20 C -0.215 4.215 21 C -0.192 4.192 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.187 0.813 26 H 0.117 0.883 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.415 -4.984 -9.917 14.554 hybrid contribution -0.839 0.869 0.429 1.282 sum 8.576 -4.115 -9.488 13.435 Atomic orbital electron populations 1.70120 1.07237 1.27564 1.48630 1.25581 0.95245 1.01717 0.93866 0.85788 0.79873 0.80482 0.77332 1.18326 1.21129 1.21057 1.20620 0.92984 0.89401 1.51136 0.91684 1.18629 0.99895 0.94753 0.85057 1.23223 0.98684 1.02125 0.95835 1.85964 1.20192 1.66196 0.94490 1.28880 0.95916 0.99964 0.93344 1.74894 1.11541 1.19474 1.16867 1.77736 1.19272 1.13587 0.95313 1.82155 0.93323 1.15516 1.18050 1.51124 1.15850 1.41216 1.04958 1.22796 0.81395 1.04354 0.99478 1.23523 1.03029 1.03078 0.88375 1.23627 0.99873 0.95340 0.99709 1.23136 0.97567 0.96422 1.04386 1.22488 0.93833 1.01414 1.01490 0.93041 0.91626 0.90332 0.81279 0.88254 0.83434 0.83237 0.88967 0.88895 0.89393 0.91536 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.43 12.93 21.45 0.28 -48.16 16 2 C 0.04 1.93 5.39 84.65 0.46 2.38 16 3 Si 0.94 40.10 29.55 68.60 2.03 42.12 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.50 -24.32 7.54 25.60 0.19 -24.12 16 8 H 0.07 3.11 7.82 -2.91 -0.02 3.08 16 9 C 0.02 0.84 1.64 -52.93 -0.09 0.75 16 10 C -0.05 -2.09 5.35 71.98 0.38 -1.71 16 11 S 0.10 3.80 20.81 -56.49 -1.18 2.63 16 12 C 0.20 7.59 8.15 179.84 1.47 9.05 16 13 N -0.37 -15.65 11.57 -57.41 -0.66 -16.31 16 14 N -0.06 -2.60 13.38 37.02 0.50 -2.11 16 15 N -0.10 -3.71 13.45 37.02 0.50 -3.21 16 16 N -0.33 -10.79 4.01 -327.29 -1.31 -12.10 16 17 C 0.02 0.48 6.73 44.99 0.30 0.79 16 18 C -0.14 -2.18 10.22 30.59 0.31 -1.87 16 19 C -0.15 -2.21 10.46 30.59 0.32 -1.89 16 20 C -0.18 -6.79 9.88 30.59 0.30 -6.49 16 21 C -0.15 -6.61 9.47 30.60 0.29 -6.32 16 22 H 0.26 13.57 8.32 -92.71 -0.77 12.80 16 23 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 24 H 0.08 3.12 7.95 -2.39 -0.02 3.10 16 25 H 0.17 3.21 8.08 -2.39 -0.02 3.19 16 26 H 0.10 1.84 7.91 -2.39 -0.02 1.82 16 27 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 3.10 8.08 -2.38 -0.02 3.08 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -60.80 307.00 5.20 -55.60 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.11 Total: 10.95 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.94 Total: -29.42 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -0.71 Total: -81.89 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.18 Total: 2.63 kcal Total: -60.80 5.20 -55.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.193 kcal (2) G-P(sol) polarization free energy of solvation -60.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds