Wall clock time and date at job start Mon Mar 30 2020 00:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29353 * 124.67547 * 2 1 4 4 C 1.30957 * 117.49430 * 179.72670 * 3 2 1 5 5 C 1.37058 * 113.84921 * 0.52482 * 4 3 2 6 6 C 1.41729 * 126.19541 * 179.78761 * 5 4 3 7 7 C 1.35556 * 120.00016 * 179.71430 * 6 5 4 8 8 C 1.41553 * 119.99627 * 179.71944 * 7 6 5 9 9 O 1.21773 * 120.00180 * 0.27958 * 8 7 6 10 10 N 1.34782 * 119.99642 * 180.27255 * 8 7 6 11 11 C 1.46499 * 119.99694 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.47358 * 325.00500 * 11 10 8 13 13 C 1.52996 * 109.47033 * 85.00186 * 11 10 8 14 14 C 1.50699 * 109.47054 * 205.00345 * 11 10 8 15 15 H 1.07998 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00037 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99896 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00301 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46913 * 59.99971 * 18 16 14 20 20 H 1.48498 * 109.47438 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47025 * 300.00617 * 18 16 14 22 22 S 1.70918 * 124.67656 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46619 * 269.97457 * 1 2 3 24 24 H 1.08995 * 109.47108 * 29.97509 * 1 2 3 25 25 H 1.08997 * 109.46998 * 149.97962 * 1 2 3 26 26 H 1.08002 * 123.07287 * 180.31076 * 4 3 2 27 27 H 1.08002 * 119.99501 * 359.71070 * 6 5 4 28 28 H 1.08002 * 120.00485 * 0.02562 * 7 6 5 29 29 H 0.97000 * 119.99926 * 0.02562 * 10 8 7 30 30 H 1.09005 * 109.47296 * 179.97438 * 13 11 10 31 31 H 1.08994 * 109.47417 * 299.99847 * 13 11 10 32 32 H 1.09000 * 109.47199 * 60.00490 * 13 11 10 33 33 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0638 0.0000 4 6 3.5422 0.9001 0.0055 5 6 3.9354 -0.4129 -0.0008 6 6 5.2712 -0.8866 -0.0013 7 6 5.5176 -2.2196 -0.0022 8 6 6.8517 -2.6926 -0.0087 9 8 7.7780 -1.9021 -0.0083 10 7 7.0967 -4.0179 -0.0151 11 6 8.4775 -4.5075 -0.0212 12 1 9.0996 -3.8329 -0.6096 13 6 9.0044 -4.5656 1.4140 14 6 8.5188 -5.8864 -0.6278 15 1 7.6078 -6.3514 -0.9745 16 6 9.7199 -6.5539 -0.7412 17 7 10.8294 -5.9875 -0.3195 18 14 9.7711 -8.2634 -1.4924 19 1 9.2589 -8.2076 -2.8851 20 1 11.1707 -8.7597 -1.4987 21 1 8.9242 -9.1823 -0.6900 22 16 2.4794 -1.4056 -0.0006 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 4.2401 1.7243 0.0110 27 1 6.0927 -0.1855 -0.0011 28 1 4.6961 -2.9207 -0.0029 29 1 6.3589 -4.6475 -0.0156 30 1 10.0316 -4.9303 1.4095 31 1 8.9745 -3.5683 1.8527 32 1 8.3824 -5.2402 2.0023 33 1 11.6743 -6.4573 -0.3989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112280185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:46 Heat of formation + Delta-G solvation = 13.640795 kcal Electronic energy + Delta-G solvation = -16731.397195 eV Core-core repulsion = 13884.090368 eV Total energy + Delta-G solvation = -2847.306826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88336 -39.08289 -35.17242 -34.31332 -32.40475 -31.64419 -29.35448 -27.78302 -25.26568 -24.57217 -23.00715 -20.60885 -19.75394 -19.38318 -17.95675 -17.08153 -16.12234 -15.28056 -15.20670 -15.06634 -14.34918 -14.17317 -14.09990 -13.53553 -13.14924 -13.04133 -12.66991 -12.40907 -12.24143 -11.71540 -11.38877 -11.10575 -10.99932 -10.84297 -10.66257 -10.33179 -10.23442 -9.93046 -9.33842 -9.16783 -9.05628 -8.55619 -8.30258 -7.84951 -6.12440 -4.21972 -0.10875 1.05455 1.48293 1.74931 2.75431 3.25423 3.30653 3.31866 3.89389 3.99711 4.16617 4.40290 4.73030 4.98345 5.07094 5.07998 5.11713 5.16802 5.19993 5.50306 5.71748 5.93993 6.22098 6.32360 6.83445 6.96910 7.15116 7.44862 7.47718 7.56224 7.69444 7.91462 8.14697 8.64698 8.76977 9.10091 9.45452 10.93585 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039997 B = 0.003428 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.889787 B = 8165.846712 C = 8658.825662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.475 5.475 4 C 0.064 3.936 5 C -0.205 4.205 6 C -0.011 4.011 7 C -0.184 4.184 8 C 0.530 3.470 9 O -0.559 6.559 10 N -0.701 5.701 11 C 0.263 3.737 12 H 0.050 0.950 13 C -0.147 4.147 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.155 5.845 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.183 0.817 27 H 0.151 0.849 28 H 0.118 0.882 29 H 0.389 0.611 30 H 0.090 0.910 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.099 8.525 1.269 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.189 5.189 4 C -0.092 4.092 5 C -0.326 4.326 6 C -0.033 4.033 7 C -0.208 4.208 8 C 0.318 3.682 9 O -0.442 6.442 10 N -0.348 5.348 11 C 0.161 3.839 12 H 0.068 0.932 13 C -0.205 4.205 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 S 0.413 5.587 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.200 0.800 27 H 0.169 0.831 28 H 0.136 0.864 29 H 0.222 0.778 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.770 8.429 1.279 20.615 hybrid contribution 0.377 -0.593 -0.364 0.791 sum -18.393 7.836 0.915 20.014 Atomic orbital electron populations 1.20454 0.85180 1.04260 1.03908 1.27223 1.01983 0.91337 1.03842 1.65990 1.05302 1.31523 1.16102 1.22587 0.90894 0.95263 1.00436 1.24006 0.97965 0.96604 1.13994 1.20531 0.92415 0.96422 0.93933 1.22385 0.97896 0.95974 1.04567 1.16921 0.88770 0.83777 0.78713 1.90793 1.46332 1.55422 1.51605 1.46521 1.11698 1.05457 1.71082 1.18760 0.76618 0.94475 0.94047 0.93228 1.22074 1.03943 0.97226 0.97290 1.21189 0.94134 1.00663 1.41417 0.92111 1.24891 0.95346 0.98295 0.95167 1.69893 0.98503 1.37919 1.45775 0.86498 0.77152 0.83692 0.79692 1.20158 1.21112 1.20149 1.83979 0.97135 1.11320 1.66311 0.89534 0.89256 0.90035 0.79976 0.83115 0.86367 0.77825 0.89105 0.96590 0.95471 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.30 7.37 -13.32 -0.10 0.20 16 3 N -0.48 -5.62 10.50 -11.18 -0.12 -5.73 16 4 C 0.06 0.73 11.38 -18.35 -0.21 0.52 16 5 C -0.20 -2.47 6.26 -38.68 -0.24 -2.71 16 6 C -0.01 -0.15 9.39 -39.21 -0.37 -0.51 16 7 C -0.18 -2.83 9.31 -39.28 -0.37 -3.20 16 8 C 0.53 10.78 7.52 -14.99 -0.11 10.67 16 9 O -0.56 -13.47 15.77 5.12 0.08 -13.39 16 10 N -0.70 -14.84 5.06 -57.85 -0.29 -15.13 16 11 C 0.26 6.77 2.56 -69.09 -0.18 6.59 16 12 H 0.05 1.47 7.58 -51.92 -0.39 1.08 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 14 C -0.54 -14.28 8.73 -34.44 -0.30 -14.58 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -25.00 11.32 55.43 0.63 -24.37 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 S 0.16 1.56 21.93 -107.50 -2.36 -0.80 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.15 2.13 7.46 -52.49 -0.39 1.74 16 28 H 0.12 1.51 7.10 -52.49 -0.37 1.14 16 29 H 0.39 7.07 8.50 -40.82 -0.35 6.72 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -31.93 304.49 -7.64 -39.57 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.90 Total: 4.42 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.25 Total: -4.77 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.22 Total: -45.23 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.36 Total: -0.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.93 -7.64 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112280185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.206 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds