Wall clock time and date at job start Mon Mar 30 2020 00:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29353 * 124.67547 * 2 1 4 4 C 1.30957 * 117.49430 * 179.72670 * 3 2 1 5 5 C 1.37058 * 113.84921 * 0.52482 * 4 3 2 6 6 C 1.41729 * 126.19541 * 179.78761 * 5 4 3 7 7 C 1.35556 * 120.00016 * 179.71430 * 6 5 4 8 8 C 1.41553 * 119.99627 * 179.71944 * 7 6 5 9 9 O 1.21773 * 120.00180 * 0.27958 * 8 7 6 10 10 N 1.34782 * 119.99642 * 180.27255 * 8 7 6 11 11 C 1.46499 * 119.99694 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.47358 * 325.00500 * 11 10 8 13 13 C 1.52996 * 109.47033 * 85.00186 * 11 10 8 14 14 C 1.50699 * 109.47054 * 205.00345 * 11 10 8 15 15 H 1.07998 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00037 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99896 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00301 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46913 * 59.99971 * 18 16 14 20 20 H 1.48498 * 109.47438 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47025 * 300.00617 * 18 16 14 22 22 S 1.70918 * 124.67656 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46619 * 269.97457 * 1 2 3 24 24 H 1.08995 * 109.47108 * 29.97509 * 1 2 3 25 25 H 1.08997 * 109.46998 * 149.97962 * 1 2 3 26 26 H 1.08002 * 123.07287 * 180.31076 * 4 3 2 27 27 H 1.08002 * 119.99501 * 359.71070 * 6 5 4 28 28 H 1.08002 * 120.00485 * 0.02562 * 7 6 5 29 29 H 0.97000 * 119.99926 * 0.02562 * 10 8 7 30 30 H 1.09005 * 109.47296 * 179.97438 * 13 11 10 31 31 H 1.08994 * 109.47417 * 299.99847 * 13 11 10 32 32 H 1.09000 * 109.47199 * 60.00490 * 13 11 10 33 33 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0638 0.0000 4 6 3.5422 0.9001 0.0055 5 6 3.9354 -0.4129 -0.0008 6 6 5.2712 -0.8866 -0.0013 7 6 5.5176 -2.2196 -0.0022 8 6 6.8517 -2.6926 -0.0087 9 8 7.7780 -1.9021 -0.0083 10 7 7.0967 -4.0179 -0.0151 11 6 8.4775 -4.5075 -0.0212 12 1 9.0996 -3.8329 -0.6096 13 6 9.0044 -4.5656 1.4140 14 6 8.5188 -5.8864 -0.6278 15 1 7.6078 -6.3514 -0.9745 16 6 9.7199 -6.5539 -0.7412 17 7 10.8294 -5.9875 -0.3195 18 14 9.7711 -8.2634 -1.4924 19 1 9.2589 -8.2076 -2.8851 20 1 11.1707 -8.7597 -1.4987 21 1 8.9242 -9.1823 -0.6900 22 16 2.4794 -1.4056 -0.0006 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 4.2401 1.7243 0.0110 27 1 6.0927 -0.1855 -0.0011 28 1 4.6961 -2.9207 -0.0029 29 1 6.3589 -4.6475 -0.0156 30 1 10.0316 -4.9303 1.4095 31 1 8.9745 -3.5683 1.8527 32 1 8.3824 -5.2402 2.0023 33 1 11.6743 -6.4573 -0.3989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112280185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:46 Heat of formation + Delta-G solvation = -8.066937 kcal Electronic energy + Delta-G solvation = -16732.338513 eV Core-core repulsion = 13884.090368 eV Total energy + Delta-G solvation = -2848.248144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90429 -40.56450 -36.90242 -35.59524 -34.33334 -32.50151 -31.05760 -28.92576 -27.34681 -25.51408 -24.25551 -22.29744 -21.03129 -20.64023 -19.20743 -18.36397 -17.76519 -17.10820 -16.29909 -16.04072 -15.96884 -15.73353 -15.07377 -14.77902 -14.48103 -14.29796 -13.74923 -13.60801 -13.47175 -13.07968 -12.97827 -12.87583 -12.73751 -12.29716 -12.27613 -12.15376 -11.78704 -11.12638 -11.00064 -10.66045 -10.57764 -10.15935 -9.81559 -9.19278 -8.17629 -6.35659 -1.06675 0.23557 0.64883 0.67229 1.45213 1.47642 1.55514 1.81142 2.36838 2.52101 2.72708 3.12693 3.19178 3.87567 3.99014 4.05706 4.17508 4.41758 4.63074 4.68096 4.74212 4.91579 4.99042 5.07164 5.09270 5.15602 5.24156 5.44121 5.60093 5.69207 5.91385 6.09122 6.63472 6.71727 6.94835 7.31535 7.53121 8.88738 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039997 B = 0.003428 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.889787 B = 8165.846712 C = 8658.825662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.044 3.956 3 N -0.505 5.505 4 C 0.082 3.918 5 C -0.248 4.248 6 C 0.029 3.971 7 C -0.217 4.217 8 C 0.532 3.468 9 O -0.609 6.609 10 N -0.700 5.700 11 C 0.269 3.731 12 H -0.001 1.001 13 C -0.134 4.134 14 C -0.550 4.550 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.974 3.026 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.263 1.263 22 S 0.187 5.813 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.199 0.801 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.406 0.594 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.041 0.959 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.258 7.970 1.061 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.229 4.229 3 N -0.220 5.220 4 C -0.075 4.075 5 C -0.369 4.369 6 C 0.007 3.993 7 C -0.240 4.240 8 C 0.323 3.677 9 O -0.494 6.494 10 N -0.348 5.348 11 C 0.165 3.835 12 H 0.017 0.983 13 C -0.192 4.192 14 C -0.588 4.588 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.188 1.188 22 S 0.446 5.554 23 H 0.123 0.877 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.215 0.785 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.241 0.759 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.983 7.849 1.075 23.367 hybrid contribution 1.159 -0.203 -0.292 1.213 sum -20.823 7.646 0.783 22.197 Atomic orbital electron populations 1.20719 0.82410 1.05683 1.05429 1.28035 1.03654 0.90949 1.00307 1.66130 1.05412 1.32393 1.18073 1.22961 0.91350 0.95590 0.97647 1.23889 0.97903 0.97568 1.17527 1.20525 0.93326 0.95677 0.89789 1.22017 0.95590 0.96963 1.09406 1.17565 0.90287 0.82884 0.76959 1.90760 1.48350 1.56350 1.53973 1.46244 1.10374 1.06394 1.71798 1.18357 0.78375 0.93400 0.93325 0.98329 1.21899 1.02814 0.97126 0.97405 1.21534 0.94852 1.00920 1.41517 0.90786 1.25833 0.94878 1.02463 0.95474 1.70051 0.99108 1.39640 1.46830 0.85363 0.77174 0.78628 0.78966 1.19532 1.21144 1.18754 1.83870 0.95623 1.10580 1.65369 0.87748 0.88619 0.87829 0.78470 0.84092 0.83704 0.75922 0.91381 0.96923 0.94039 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.46 71.24 0.74 0.05 16 2 C 0.04 0.73 7.37 88.47 0.65 1.38 16 3 N -0.51 -10.70 10.50 -189.30 -1.99 -12.68 16 4 C 0.08 1.71 11.38 84.55 0.96 2.67 16 5 C -0.25 -5.57 6.26 22.86 0.14 -5.42 16 6 C 0.03 0.79 9.39 22.51 0.21 1.01 16 7 C -0.22 -6.58 9.31 22.47 0.21 -6.37 16 8 C 0.53 22.21 7.52 85.06 0.64 22.85 16 9 O -0.61 -30.77 15.77 -4.58 -0.07 -30.84 16 10 N -0.70 -30.18 5.06 -455.12 -2.30 -32.48 16 11 C 0.27 14.33 2.56 44.24 0.11 14.44 16 12 H 0.00 -0.08 7.58 -2.38 -0.02 -0.09 16 13 C -0.13 -6.94 9.26 71.98 0.67 -6.28 16 14 C -0.55 -29.55 8.73 25.60 0.22 -29.32 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 18 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 S 0.19 3.26 21.93 -56.49 -1.24 2.02 16 23 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 27 H 0.14 4.05 7.46 -2.91 -0.02 4.02 16 28 H 0.15 3.50 7.10 -2.91 -0.02 3.48 16 29 H 0.41 14.56 8.50 -92.71 -0.79 13.78 16 30 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -70.90 304.49 2.03 -68.87 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.34 Total: 17.80 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.01 Total: -3.81 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -4.05 Total: -98.17 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.24 Total: 2.02 kcal Total: -70.90 2.03 -68.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112280185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -70.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds