Wall clock time and date at job start Mon Mar 30 2020 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47130 * 2 1 4 4 C 1.34780 * 120.00191 * 270.00266 * 3 2 1 5 5 O 1.21273 * 119.99904 * 184.79927 * 4 3 2 6 6 C 1.50705 * 119.99678 * 4.79459 * 4 3 2 7 7 S 1.80999 * 109.46769 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99887 * 180.02562 * 7 6 4 9 9 H 1.08001 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.38800 * 120.00179 * 180.02562 * 8 7 6 11 11 N 1.31631 * 119.99717 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00291 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47368 * 59.99540 * 12 10 8 14 14 H 1.48498 * 109.47447 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46822 * 299.99673 * 12 10 8 16 16 C 1.39542 * 120.00189 * 90.00503 * 3 2 1 17 17 C 1.39395 * 120.86145 * 67.58936 * 16 3 2 18 18 C 1.37951 * 119.07332 * 179.97438 * 17 16 3 19 19 N 1.31968 * 120.84092 * 0.02642 * 18 17 16 20 20 C 1.31973 * 121.89468 * 359.95375 * 19 18 17 21 21 C 1.37956 * 120.83448 * 0.04534 * 20 19 18 22 22 H 1.09000 * 109.46947 * 299.99939 * 1 2 3 23 23 H 1.09001 * 109.47403 * 59.99651 * 1 2 3 24 24 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46947 * 240.00061 * 2 1 3 26 26 H 1.09001 * 109.47403 * 120.00349 * 2 1 3 27 27 H 1.08999 * 109.46919 * 299.99675 * 6 4 3 28 28 H 1.08998 * 109.47088 * 60.00072 * 6 4 3 29 29 H 0.97001 * 120.00083 * 180.02562 * 11 10 8 30 30 H 1.07995 * 120.46511 * 359.70927 * 17 16 3 31 31 H 1.08006 * 119.58176 * 180.02562 * 18 17 16 32 32 H 1.07991 * 119.57928 * 180.02562 * 20 19 18 33 33 H 1.08004 * 120.45824 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.7289 3.1277 -1.1690 6 6 1.8901 1.3463 -2.4700 7 16 2.3086 2.4448 -3.8463 8 6 1.8060 1.4398 -5.2036 9 1 1.3849 0.4616 -5.0244 10 6 1.9511 1.9054 -6.5031 11 7 2.4638 3.0980 -6.7215 12 14 1.4176 0.8404 -7.9420 13 1 -0.0329 0.5436 -7.8271 14 1 1.6756 1.5616 -9.2141 15 1 2.1856 -0.4306 -7.9284 16 6 2.2510 2.0390 1.2084 17 6 3.2815 1.6349 2.0557 18 6 3.4790 2.3119 3.2413 19 7 2.7073 3.3286 3.5765 20 6 1.7220 3.7413 2.8015 21 6 1.4591 3.1176 1.5994 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.4515 0.4167 -2.5640 28 1 0.8221 1.1294 -2.4895 29 1 2.5649 3.4236 -7.6296 30 1 3.9137 0.8007 1.7897 31 1 4.2753 2.0059 3.9037 32 1 1.1138 4.5777 3.1124 33 1 0.6510 3.4601 0.9701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117665412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:41 Heat of formation + Delta-G solvation = 5.237146 kcal Electronic energy + Delta-G solvation = -17364.406325 eV Core-core repulsion = 14516.735089 eV Total energy + Delta-G solvation = -2847.671236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79673 -39.07188 -36.10683 -32.50331 -32.47319 -31.33981 -30.08138 -28.90497 -25.55704 -24.03404 -23.52162 -22.93205 -19.85464 -17.83808 -17.52728 -16.59694 -16.52834 -15.85789 -15.05594 -14.85739 -14.84297 -14.02313 -13.92845 -13.82137 -13.75747 -13.49673 -13.03016 -12.64773 -12.22929 -11.98838 -11.83329 -11.26590 -11.09870 -11.07019 -10.83154 -10.10863 -9.85244 -9.78015 -9.47135 -9.25845 -9.10749 -8.75826 -8.31197 -6.57552 -6.26489 -3.98493 1.04223 1.08323 2.68183 2.83506 3.19807 3.20057 3.25633 3.46335 3.70681 4.14901 4.36133 4.69354 4.74389 4.83866 4.92314 5.01194 5.08479 5.10388 5.18861 5.27338 5.46530 5.58315 5.63606 5.67264 5.69020 5.79975 5.93417 6.10498 6.15715 6.39261 6.79729 7.23588 7.54141 7.86852 8.29638 8.34154 9.18576 10.80878 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037279 B = 0.004349 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.910433 B = 6437.016685 C = 6843.180332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.584 5.584 4 C 0.537 3.463 5 O -0.498 6.498 6 C -0.149 4.149 7 S -0.059 6.059 8 C -0.537 4.537 9 H 0.073 0.927 10 C 0.075 3.925 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.274 1.274 16 C 0.202 3.798 17 C -0.179 4.179 18 C 0.107 3.893 19 N -0.492 5.492 20 C 0.109 3.891 21 C -0.164 4.164 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.270 0.730 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -7.051 16.899 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 N -0.317 5.317 4 C 0.325 3.675 5 O -0.369 6.369 6 C -0.299 4.299 7 S 0.167 5.833 8 C -0.685 4.685 9 H 0.091 0.909 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.102 3.898 17 C -0.201 4.201 18 C -0.050 4.050 19 N -0.202 5.202 20 C -0.048 4.048 21 C -0.185 4.185 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.970 -4.835 17.485 18.248 hybrid contribution -1.085 -2.474 -1.828 3.262 sum -3.055 -7.309 15.657 17.547 Atomic orbital electron populations 1.22235 0.95375 1.02635 1.02963 1.21683 0.94953 0.81009 1.03776 1.45694 1.67691 1.14869 1.03451 1.20553 0.76929 0.85835 0.84136 1.90741 1.40571 1.19163 1.86452 1.23598 1.04839 1.04879 0.96615 1.85455 1.82531 1.21871 0.93409 1.22800 1.48698 1.04792 0.92230 0.90904 1.24990 0.94696 0.95422 0.98362 1.70004 1.41497 1.16841 1.21858 0.86217 0.79134 0.79869 0.80250 1.19899 1.20771 1.19894 1.17860 0.92821 0.92828 0.86273 1.22285 0.97879 1.03269 0.96641 1.22607 0.97210 0.91040 0.94189 1.67673 1.05209 1.13310 1.33973 1.22640 0.94039 0.97977 0.90116 1.22355 1.00740 0.97376 0.98054 0.92384 0.91591 0.91106 0.89181 0.90249 0.88967 0.88782 0.92051 0.84640 0.82531 0.82452 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.23 37.16 0.38 -1.27 16 2 C 0.11 1.11 5.85 -4.04 -0.02 1.09 16 3 N -0.58 -8.30 2.55 -113.26 -0.29 -8.58 16 4 C 0.54 10.04 7.56 -10.98 -0.08 9.96 16 5 O -0.50 -11.37 15.63 5.56 0.09 -11.28 16 6 C -0.15 -2.92 4.82 36.01 0.17 -2.74 16 7 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 8 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 9 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 10 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 11 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 12 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 16 C 0.20 2.78 4.78 -83.49 -0.40 2.38 16 17 C -0.18 -2.11 9.81 -39.26 -0.39 -2.49 16 18 C 0.11 1.19 11.17 -17.60 -0.20 0.99 16 19 N -0.49 -6.26 10.36 -13.34 -0.14 -6.40 16 20 C 0.11 1.32 11.17 -17.59 -0.20 1.12 16 21 C -0.16 -2.18 9.67 -39.25 -0.38 -2.56 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.73 6.95 -51.93 -0.36 0.37 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.90 6.47 -51.93 -0.34 0.57 16 26 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 27 H 0.09 1.65 7.26 -51.92 -0.38 1.27 16 28 H 0.09 1.69 6.95 -51.92 -0.36 1.33 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -34.23 303.40 -7.11 -41.34 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.92 Total: -0.59 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.91 Total: -6.17 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.31 Total: -40.06 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.23 -7.11 -41.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117665412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.577 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds