Wall clock time and date at job start Mon Mar 30 2020 00:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 119.57650 * 2 1 4 4 C 1.38801 * 119.30937 * 179.97438 * 3 2 1 5 5 C 1.38399 * 118.49430 * 0.24581 * 4 3 2 6 6 C 1.38995 * 119.10316 * 359.50980 * 5 4 3 7 7 N 1.39410 * 119.69653 * 180.22444 * 6 5 4 8 8 C 1.46500 * 119.99688 * 265.03197 * 7 6 5 9 9 C 1.34769 * 120.00008 * 85.03908 * 7 6 5 10 10 O 1.21272 * 120.00354 * 5.07242 * 9 7 6 11 11 C 1.50697 * 120.00032 * 185.07968 * 9 7 6 12 12 S 1.81006 * 109.47358 * 179.97438 * 11 9 7 13 13 C 1.76198 * 99.99845 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00509 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99498 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00485 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99816 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46974 * 60.00189 * 17 15 13 19 19 H 1.48501 * 109.46863 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46907 * 300.00107 * 17 15 13 21 21 N 1.31907 * 119.57549 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47154 * 90.00164 * 1 2 3 23 23 H 1.08998 * 109.47387 * 210.00331 * 1 2 3 24 24 H 1.09002 * 109.47454 * 330.00037 * 1 2 3 25 25 H 1.08002 * 120.34481 * 359.95119 * 3 2 1 26 26 H 1.08003 * 120.75234 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.44763 * 179.74891 * 5 4 3 28 28 H 1.09002 * 109.46842 * 90.00248 * 8 7 6 29 29 H 1.09006 * 109.47226 * 209.99776 * 8 7 6 30 30 H 1.08996 * 109.47618 * 330.00107 * 8 7 6 31 31 H 1.09006 * 109.47625 * 299.99814 * 11 9 7 32 32 H 1.09009 * 109.47493 * 59.99782 * 11 9 7 33 33 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2012 0.0000 4 6 3.5766 1.1947 0.0005 5 6 4.2312 -0.0247 -0.0042 6 6 3.4810 -1.1948 0.0012 7 7 4.1276 -2.4298 0.0013 8 6 4.3652 -3.1323 -1.2622 9 6 4.5340 -2.9775 1.1636 10 8 4.2569 -2.4422 2.2159 11 6 5.3331 -4.2552 1.1558 12 16 5.7255 -4.7319 2.8573 13 6 6.6355 -6.2109 2.5585 14 1 6.7940 -6.5523 1.5463 15 6 7.1485 -6.9372 3.6242 16 7 6.9549 -6.5215 4.8581 17 14 8.1139 -8.5049 3.3075 18 1 9.3060 -8.1932 2.4788 19 1 8.5490 -9.0882 4.6020 20 1 7.2533 -9.4796 2.5901 21 7 2.1580 -1.1472 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6474 2.1358 -0.0008 26 1 4.1332 2.1203 0.0001 27 1 5.3104 -0.0665 -0.0080 28 1 5.3308 -2.8318 -1.6689 29 1 4.3641 -4.2080 -1.0856 30 1 3.5775 -2.8799 -1.9720 31 1 4.7506 -5.0453 0.6820 32 1 6.2579 -4.1021 0.5993 33 1 7.3132 -7.0293 5.6028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135247296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:00 Heat of formation + Delta-G solvation = 9.092900 kcal Electronic energy + Delta-G solvation = -17131.765252 eV Core-core repulsion = 14284.261214 eV Total energy + Delta-G solvation = -2847.504038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76164 -38.95413 -35.51483 -33.01583 -32.43006 -32.01424 -29.25378 -27.66949 -26.59403 -25.50367 -23.39798 -22.34400 -19.77221 -17.72653 -17.24374 -16.69018 -16.37695 -16.06556 -15.00626 -14.80553 -14.44609 -14.36980 -13.88488 -13.30517 -13.13490 -13.06393 -12.66076 -12.58124 -12.40557 -12.35243 -12.05903 -11.93181 -11.04963 -11.03569 -10.78093 -10.00863 -9.85182 -9.79630 -9.49949 -9.05928 -8.96874 -8.72384 -8.24603 -6.51364 -6.21460 -3.92813 0.92390 1.17358 2.69860 2.94886 3.23576 3.24046 3.29132 3.51701 3.59908 4.19927 4.32912 4.61545 4.84649 4.93243 5.00503 5.04014 5.13468 5.20016 5.38500 5.40041 5.43602 5.44976 5.57082 5.65874 5.84412 5.87174 5.96775 6.04019 6.10515 6.29577 6.90827 7.35160 7.59240 7.91191 8.34884 8.47255 9.23471 10.85925 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.003891 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.786041 B = 7194.664239 C = 7305.401704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.139 3.861 3 C -0.176 4.176 4 C -0.065 4.065 5 C -0.161 4.161 6 C 0.366 3.634 7 N -0.580 5.580 8 C 0.087 3.913 9 C 0.541 3.459 10 O -0.502 6.502 11 C -0.147 4.147 12 S -0.060 6.060 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 N -0.485 5.485 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 13.540 -14.542 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.000 4.000 3 C -0.196 4.196 4 C -0.091 4.091 5 C -0.183 4.183 6 C 0.140 3.860 7 N -0.316 5.316 8 C -0.055 4.055 9 C 0.330 3.670 10 O -0.373 6.373 11 C -0.297 4.297 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 N -0.197 5.197 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.754 13.484 -12.758 20.524 hybrid contribution 1.465 -0.909 -1.458 2.258 sum -7.289 12.575 -14.216 20.331 Atomic orbital electron populations 1.20728 0.88660 1.03708 1.02970 1.21103 0.96870 0.87518 0.94514 1.21958 0.94945 0.99224 1.03481 1.21489 0.94358 0.97916 0.95353 1.22101 1.01679 0.92316 1.02188 1.18052 0.87170 0.85785 0.94970 1.45329 1.58595 1.19241 1.08394 1.21834 1.01350 0.97991 0.84326 1.20502 0.78668 0.85750 0.82105 1.90723 1.54396 1.62112 1.30076 1.23552 1.01499 0.95954 1.08708 1.85451 1.70005 1.30534 0.97299 1.22816 1.39813 1.10148 0.95660 0.90874 1.24992 0.95943 0.98177 0.94400 1.70008 1.43231 1.38798 0.98235 0.86217 0.79849 0.81689 0.77704 1.19908 1.20813 1.19903 1.67141 1.09688 1.30369 1.12507 0.90433 0.90300 0.90579 0.84581 0.84357 0.84539 0.92052 0.89921 0.91192 0.88820 0.88793 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.00 0.37 -0.56 16 2 C 0.14 1.73 6.78 -82.61 -0.56 1.17 16 3 C -0.18 -1.81 9.73 -39.42 -0.38 -2.19 16 4 C -0.06 -0.69 10.17 -39.31 -0.40 -1.09 16 5 C -0.16 -2.15 10.02 -39.24 -0.39 -2.54 16 6 C 0.37 5.85 5.44 -154.69 -0.84 5.01 16 7 N -0.58 -9.48 2.97 -122.77 -0.36 -9.85 16 8 C 0.09 1.02 10.19 59.85 0.61 1.64 16 9 C 0.54 11.06 7.65 -10.99 -0.08 10.98 16 10 O -0.50 -12.33 15.84 5.56 0.09 -12.25 16 11 C -0.15 -3.04 4.83 36.00 0.17 -2.87 16 12 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 13 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.12 5.50 -17.43 -0.10 2.03 16 16 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 17 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 N -0.48 -7.73 10.30 -8.60 -0.09 -7.82 16 22 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 26 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 27 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.93 6.48 -51.93 -0.34 0.59 16 30 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 31 H 0.09 1.79 7.25 -51.91 -0.38 1.41 16 32 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -36.23 306.46 -7.62 -43.85 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.05 Total: -2.12 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.31 Total: -3.41 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.28 Total: -43.20 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.23 -7.62 -43.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135247296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.944 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds