Wall clock time and date at job start Mon Mar 30 2020 00:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 119.57650 * 2 1 4 4 C 1.38801 * 119.30937 * 179.97438 * 3 2 1 5 5 C 1.38399 * 118.49430 * 0.24581 * 4 3 2 6 6 C 1.38995 * 119.10316 * 359.50980 * 5 4 3 7 7 N 1.39410 * 119.69653 * 180.22444 * 6 5 4 8 8 C 1.46500 * 119.99688 * 265.03197 * 7 6 5 9 9 C 1.34769 * 120.00008 * 85.03908 * 7 6 5 10 10 O 1.21272 * 120.00354 * 5.07242 * 9 7 6 11 11 C 1.50697 * 120.00032 * 185.07968 * 9 7 6 12 12 S 1.81006 * 109.47358 * 179.97438 * 11 9 7 13 13 C 1.76198 * 99.99845 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00509 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99498 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00485 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99816 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46974 * 60.00189 * 17 15 13 19 19 H 1.48501 * 109.46863 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46907 * 300.00107 * 17 15 13 21 21 N 1.31907 * 119.57549 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47154 * 90.00164 * 1 2 3 23 23 H 1.08998 * 109.47387 * 210.00331 * 1 2 3 24 24 H 1.09002 * 109.47454 * 330.00037 * 1 2 3 25 25 H 1.08002 * 120.34481 * 359.95119 * 3 2 1 26 26 H 1.08003 * 120.75234 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.44763 * 179.74891 * 5 4 3 28 28 H 1.09002 * 109.46842 * 90.00248 * 8 7 6 29 29 H 1.09006 * 109.47226 * 209.99776 * 8 7 6 30 30 H 1.08996 * 109.47618 * 330.00107 * 8 7 6 31 31 H 1.09006 * 109.47625 * 299.99814 * 11 9 7 32 32 H 1.09009 * 109.47493 * 59.99782 * 11 9 7 33 33 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2012 0.0000 4 6 3.5766 1.1947 0.0005 5 6 4.2312 -0.0247 -0.0042 6 6 3.4810 -1.1948 0.0012 7 7 4.1276 -2.4298 0.0013 8 6 4.3652 -3.1323 -1.2622 9 6 4.5340 -2.9775 1.1636 10 8 4.2569 -2.4422 2.2159 11 6 5.3331 -4.2552 1.1558 12 16 5.7255 -4.7319 2.8573 13 6 6.6355 -6.2109 2.5585 14 1 6.7940 -6.5523 1.5463 15 6 7.1485 -6.9372 3.6242 16 7 6.9549 -6.5215 4.8581 17 14 8.1139 -8.5049 3.3075 18 1 9.3060 -8.1932 2.4788 19 1 8.5490 -9.0882 4.6020 20 1 7.2533 -9.4796 2.5901 21 7 2.1580 -1.1472 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6474 2.1358 -0.0008 26 1 4.1332 2.1203 0.0001 27 1 5.3104 -0.0665 -0.0080 28 1 5.3308 -2.8318 -1.6689 29 1 4.3641 -4.2080 -1.0856 30 1 3.5775 -2.8799 -1.9720 31 1 4.7506 -5.0453 0.6820 32 1 6.2579 -4.1021 0.5993 33 1 7.3132 -7.0293 5.6028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135247296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:59 Heat of formation + Delta-G solvation = -15.230501 kcal Electronic energy + Delta-G solvation = -17132.819994 eV Core-core repulsion = 14284.261214 eV Total energy + Delta-G solvation = -2848.558780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88651 -40.27136 -36.86017 -34.59010 -33.90803 -33.06458 -30.75008 -28.59666 -27.73555 -27.56978 -24.54045 -23.24326 -21.12787 -19.68766 -18.58887 -17.80439 -17.64754 -17.08180 -16.88116 -16.38490 -16.10626 -15.35686 -15.11958 -14.59543 -14.48819 -14.32681 -13.95426 -13.68257 -13.46421 -13.24102 -13.18274 -13.10852 -12.88202 -12.85745 -12.63357 -11.77643 -11.22400 -11.12883 -10.88680 -10.80142 -10.30633 -10.01407 -9.82228 -8.70355 -8.34770 -6.14477 -0.03809 0.26974 1.17621 1.37119 1.43076 1.45119 1.54442 1.88312 2.26512 2.65036 2.99518 3.20302 3.42736 3.70837 3.86108 3.98832 4.09470 4.13864 4.18879 4.35812 4.42342 4.54589 4.58115 4.73526 4.78114 4.78663 5.08726 5.14704 5.16937 5.39657 5.41446 5.83032 6.01075 6.19549 6.87517 7.04135 7.06118 8.74410 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.003891 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.786041 B = 7194.664239 C = 7305.401704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.119 3.881 3 C -0.164 4.164 4 C -0.060 4.060 5 C -0.175 4.175 6 C 0.326 3.674 7 N -0.569 5.569 8 C 0.079 3.921 9 C 0.541 3.459 10 O -0.556 6.556 11 C -0.119 4.119 12 S -0.152 6.152 13 C -0.546 4.546 14 H 0.086 0.914 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 1.000 3.000 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.262 1.262 21 N -0.523 5.523 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 14.383 -16.879 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 C -0.183 4.183 4 C -0.086 4.086 5 C -0.197 4.197 6 C 0.102 3.898 7 N -0.302 5.302 8 C -0.062 4.062 9 C 0.329 3.671 10 O -0.432 6.432 11 C -0.269 4.269 12 S 0.075 5.925 13 C -0.694 4.694 14 H 0.104 0.896 15 C -0.191 4.191 16 N -0.549 5.549 17 Si 0.822 3.178 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.186 1.186 21 N -0.236 5.236 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.196 0.804 26 H 0.194 0.806 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.710 14.338 -15.167 22.616 hybrid contribution 1.328 -1.002 -0.848 1.867 sum -7.382 13.336 -16.015 22.109 Atomic orbital electron populations 1.20820 0.86542 1.04119 1.04247 1.21793 0.98463 0.87571 0.94153 1.22434 0.95021 1.00006 1.00880 1.21974 0.94909 0.98203 0.93511 1.22271 1.02011 0.92723 1.02667 1.18322 0.87809 0.85971 0.97703 1.45245 1.57113 1.19569 1.08299 1.22150 1.03316 0.97940 0.82789 1.20386 0.78574 0.85425 0.82682 1.90690 1.56767 1.63534 1.32258 1.23350 1.03016 0.96853 1.03726 1.85659 1.70759 1.31704 1.04371 1.23170 1.39724 1.10041 0.96468 0.89577 1.26154 0.96903 1.02110 0.93915 1.70184 1.44610 1.40622 0.99453 0.84978 0.78410 0.76594 0.77847 1.18438 1.20466 1.18625 1.67072 1.09906 1.32565 1.14074 0.88632 0.92188 0.87819 0.80431 0.80595 0.84138 0.89462 0.89448 0.89806 0.86936 0.86375 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.17 71.23 0.72 -0.89 16 2 C 0.12 2.80 6.78 42.52 0.29 3.08 16 3 C -0.16 -2.85 9.73 22.37 0.22 -2.64 16 4 C -0.06 -1.11 10.17 22.44 0.23 -0.88 16 5 C -0.17 -4.51 10.02 22.49 0.23 -4.29 16 6 C 0.33 10.40 5.44 132.89 0.72 11.12 16 7 N -0.57 -18.52 2.97 -660.74 -1.96 -20.48 16 8 C 0.08 1.73 10.19 127.77 1.30 3.04 16 9 C 0.54 22.54 7.65 87.66 0.67 23.21 16 10 O -0.56 -28.60 15.84 -3.00 -0.05 -28.64 16 11 C -0.12 -4.92 4.83 71.23 0.34 -4.58 16 12 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 13 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 14 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 15 C 0.01 0.79 5.50 84.86 0.47 1.26 16 16 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 17 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 N -0.52 -16.65 10.30 -181.12 -1.87 -18.51 16 22 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 25 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 26 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 27 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.82 6.48 -2.38 -0.02 1.81 16 30 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.11 4.22 7.25 -2.39 -0.02 4.20 16 32 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -83.11 306.46 4.22 -78.89 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.11 Total: 11.49 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.84 Total: -2.28 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.54 Total: -95.26 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -83.11 4.22 -78.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135247296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.661 kcal (2) G-P(sol) polarization free energy of solvation -83.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds