Wall clock time and date at job start Mon Mar 30 2020 01:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47451 * 2 1 4 4 C 1.34773 * 120.00126 * 269.99871 * 3 2 1 5 5 O 1.21295 * 119.99975 * 184.81102 * 4 3 2 6 6 C 1.50696 * 119.99866 * 4.81178 * 4 3 2 7 7 S 1.81010 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76197 * 100.00098 * 179.97438 * 7 6 4 9 9 H 1.08005 * 120.00136 * 359.97438 * 8 7 6 10 10 C 1.38798 * 120.00174 * 180.02562 * 8 7 6 11 11 N 1.31634 * 119.99645 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00017 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47162 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47006 * 119.99683 * 12 10 8 15 15 H 1.48500 * 109.47143 * 239.99264 * 12 10 8 16 16 C 1.39952 * 119.99980 * 89.99557 * 3 2 1 17 17 C 1.39280 * 120.49167 * 247.61967 * 16 3 2 18 18 C 1.38507 * 118.35908 * 179.97438 * 17 16 3 19 19 C 1.38263 * 119.24064 * 0.25601 * 18 17 16 20 20 N 1.31857 * 120.91748 * 359.47356 * 19 18 17 21 21 C 1.31826 * 121.79534 * 0.53884 * 20 19 18 22 22 H 1.09000 * 109.47203 * 300.00388 * 1 2 3 23 23 H 1.09006 * 109.46999 * 60.00052 * 1 2 3 24 24 H 1.08999 * 109.47667 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47203 * 239.99612 * 2 1 3 26 26 H 1.09006 * 109.46999 * 119.99948 * 2 1 3 27 27 H 1.09001 * 109.47161 * 299.99784 * 6 4 3 28 28 H 1.09002 * 109.47272 * 60.00182 * 6 4 3 29 29 H 0.97001 * 119.99658 * 180.02562 * 11 10 8 30 30 H 1.07999 * 120.81691 * 359.95794 * 17 16 3 31 31 H 1.08001 * 120.37667 * 179.97438 * 18 17 16 32 32 H 1.07997 * 119.54709 * 179.72504 * 19 18 17 33 33 H 1.08002 * 119.66586 * 179.70700 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7294 3.1276 -1.1690 6 6 1.8900 1.3463 -2.4699 7 16 2.3073 2.4454 -3.8463 8 6 1.8059 1.4399 -5.2036 9 1 1.3867 0.4608 -5.0245 10 6 1.9506 1.9057 -6.5030 11 7 2.4620 3.0989 -6.7213 12 14 1.4184 0.8400 -7.9419 13 1 0.8780 -0.4458 -7.4323 14 1 0.3670 1.5454 -8.7180 15 1 2.5865 0.5737 -8.8193 16 6 2.2516 2.0409 1.2120 17 6 1.4550 3.1171 1.5955 18 6 1.7246 3.7374 2.8042 19 6 2.7702 3.2754 3.5820 20 7 3.5027 2.2504 3.1928 21 6 3.2802 1.6318 2.0502 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.4510 0.4165 -2.5640 28 1 0.8219 1.1298 -2.4894 29 1 2.5628 3.4245 -7.6295 30 1 0.6473 3.4597 0.9657 31 1 1.1277 4.5751 3.1333 32 1 2.9876 3.7582 4.5233 33 1 3.9046 0.7987 1.7630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171502015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:38 Heat of formation + Delta-G solvation = 5.007145 kcal Electronic energy + Delta-G solvation = -17370.375453 eV Core-core repulsion = 14522.694243 eV Total energy + Delta-G solvation = -2847.681210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78456 -39.03032 -36.00390 -32.57637 -32.46965 -31.67006 -29.95552 -28.55024 -25.54379 -24.09628 -23.49888 -22.92082 -19.71130 -17.77493 -17.47048 -16.86985 -16.56824 -16.38005 -14.84921 -14.84012 -14.55507 -14.04101 -13.89425 -13.82090 -13.47864 -13.23135 -12.98731 -12.67951 -12.32396 -12.16060 -11.82240 -11.23630 -11.09358 -11.05959 -10.80722 -10.11017 -9.92926 -9.82190 -9.61931 -9.25201 -9.11272 -8.51612 -8.28590 -6.56047 -6.25906 -3.97371 0.93527 1.17580 2.72825 2.87300 3.18905 3.21458 3.28051 3.48984 3.67611 4.15678 4.37126 4.72671 4.77830 4.81841 4.86392 4.95424 5.08838 5.10832 5.19010 5.27917 5.46323 5.53524 5.64069 5.66914 5.82468 5.95618 5.98233 6.02904 6.15536 6.32255 6.82774 7.29015 7.55810 7.82689 8.31089 8.39179 9.19589 10.81583 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037356 B = 0.004357 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.358914 B = 6425.502213 C = 6830.694442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.579 5.579 4 C 0.536 3.464 5 O -0.500 6.500 6 C -0.149 4.149 7 S -0.061 6.061 8 C -0.535 4.535 9 H 0.074 0.926 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.107 3.893 17 C -0.067 4.067 18 C -0.161 4.161 19 C 0.088 3.912 20 N -0.476 5.476 21 C 0.097 3.903 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.268 0.732 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -5.461 17.561 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.312 5.312 4 C 0.325 3.675 5 O -0.372 6.372 6 C -0.299 4.299 7 S 0.166 5.834 8 C -0.683 4.683 9 H 0.092 0.908 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.014 3.986 17 C -0.095 4.095 18 C -0.181 4.181 19 C -0.068 4.068 20 N -0.185 5.185 21 C -0.062 4.062 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.610 -3.971 17.911 18.531 hybrid contribution -1.671 -1.640 -1.534 2.799 sum -4.281 -5.611 16.377 17.833 Atomic orbital electron populations 1.22231 0.95515 1.02572 1.02847 1.21687 0.94870 0.81170 1.03748 1.45670 1.67593 1.14706 1.03273 1.20554 0.76943 0.85854 0.84197 1.90737 1.40743 1.19258 1.86493 1.23594 1.04797 1.04861 0.96654 1.85454 1.82635 1.21854 0.93488 1.22884 1.48502 1.04728 0.92213 0.90805 1.24996 0.94729 0.95429 0.98387 1.70029 1.41719 1.16841 1.21624 0.86109 0.78403 0.79872 0.81071 1.19577 1.20550 1.20526 1.18629 0.95981 0.95749 0.88245 1.21800 0.97836 0.94393 0.95447 1.22078 0.99665 1.01245 0.95101 1.22747 0.91737 0.92782 0.99582 1.67684 1.27254 1.08152 1.15378 1.22915 0.93798 0.99327 0.90186 0.92489 0.91649 0.91164 0.89197 0.90257 0.88950 0.88844 0.92186 0.84730 0.84489 0.82619 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.23 37.16 0.38 -1.27 16 2 C 0.11 1.12 5.85 -4.05 -0.02 1.09 16 3 N -0.58 -8.25 2.54 -113.34 -0.29 -8.54 16 4 C 0.54 10.04 7.55 -10.99 -0.08 9.96 16 5 O -0.50 -11.45 15.63 5.54 0.09 -11.36 16 6 C -0.15 -2.92 4.82 36.00 0.17 -2.75 16 7 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 8 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 9 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 12 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.11 1.49 4.77 -83.54 -0.40 1.09 16 17 C -0.07 -0.87 9.71 -39.09 -0.38 -1.25 16 18 C -0.16 -1.70 10.10 -39.47 -0.40 -2.10 16 19 C 0.09 0.96 11.18 -17.53 -0.20 0.76 16 20 N -0.48 -6.19 10.35 -13.09 -0.14 -6.33 16 21 C 0.10 1.26 10.86 -17.33 -0.19 1.07 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.72 6.95 -51.93 -0.36 0.36 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.91 6.47 -51.93 -0.34 0.57 16 26 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 27 H 0.09 1.66 7.26 -51.92 -0.38 1.28 16 28 H 0.09 1.69 6.95 -51.91 -0.36 1.32 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -34.29 303.38 -7.11 -41.39 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.92 Total: -0.76 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.92 Total: -6.06 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.31 Total: -39.99 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.29 -7.11 -41.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171502015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.401 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds