Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76204 * 103.00046 * 2 1 4 4 C 1.38730 * 120.09636 * 0.02562 * 3 2 1 5 5 C 1.38255 * 119.98688 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.19911 * 0.02562 * 5 4 3 7 7 C 1.38287 * 120.20548 * 359.97438 * 6 5 4 8 8 C 1.38644 * 120.00298 * 359.97438 * 7 6 5 9 9 N 1.40002 * 120.09929 * 180.02562 * 8 7 6 10 10 C 1.46505 * 120.00009 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47187 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00059 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99537 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00503 * 359.97438 * 14 13 11 16 16 C 1.38958 * 119.99544 * 179.97438 * 14 13 11 17 17 N 1.31406 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99819 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47565 * 59.99683 * 18 16 14 20 20 H 1.48502 * 109.47393 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47339 * 299.99707 * 18 16 14 22 22 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46907 * 299.99381 * 1 2 3 24 24 H 1.08996 * 109.47182 * 59.99544 * 1 2 3 25 25 H 1.07995 * 120.01115 * 0.24945 * 4 3 2 26 26 H 1.07996 * 119.89593 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.89702 * 179.97438 * 6 5 4 28 28 H 1.07992 * 119.99887 * 180.02562 * 7 6 5 29 29 H 0.96994 * 120.00457 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.46951 * 300.00258 * 10 9 8 31 31 H 1.08997 * 109.47169 * 59.99466 * 10 9 8 32 32 H 0.97003 * 119.99770 * 359.97438 * 13 11 10 33 33 H 0.97000 * 120.00151 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1974 2.6647 0.0005 5 6 1.5110 4.0112 0.0011 6 6 2.8326 4.4175 0.0005 7 6 3.8488 3.4796 0.0000 8 6 3.5439 2.1271 0.0005 9 7 4.5712 1.1759 0.0005 10 6 5.9707 1.6091 0.0005 11 6 6.8707 0.4003 -0.0001 12 8 6.3904 -0.7134 0.0000 13 7 8.2094 0.5569 0.0003 14 6 9.0281 -0.5427 0.0003 15 1 8.6004 -1.5344 0.0003 16 6 10.4082 -0.3813 0.0002 17 7 10.9286 0.8253 -0.0004 18 14 11.5238 -1.8795 0.0008 19 1 11.2579 -2.6953 -1.2112 20 1 12.9424 -1.4405 0.0000 21 1 11.2580 -2.6941 1.2137 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.1641 2.3509 0.0050 26 1 0.7212 4.7479 0.0011 27 1 3.0720 5.4707 0.0005 28 1 4.8799 3.8007 0.0000 29 1 4.3563 0.2300 0.0013 30 1 6.1658 2.2074 -0.8894 31 1 6.1658 2.2074 0.8904 32 1 8.5934 1.4477 0.0007 33 1 11.8920 0.9380 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175110845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = -12.146243 kcal Electronic energy + Delta-G solvation = -17021.392172 eV Core-core repulsion = 14172.967136 eV Total energy + Delta-G solvation = -2848.425036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34819 -38.22321 -35.10321 -33.94674 -31.40953 -31.18916 -29.74578 -28.85355 -26.64032 -24.42589 -22.80495 -21.43698 -19.42516 -18.14806 -17.85618 -16.69183 -16.04507 -15.47798 -14.82962 -14.75613 -14.57176 -14.09442 -13.98612 -13.89571 -13.66711 -13.36911 -13.08913 -12.51879 -12.18536 -12.07850 -11.81671 -11.60286 -11.10812 -11.00305 -10.49897 -10.30173 -10.08815 -10.02219 -9.61981 -9.52755 -8.61166 -8.09715 -7.82824 -6.85210 -6.51223 -3.92834 1.35607 1.60130 1.70070 2.51791 3.14683 3.21993 3.25844 3.64218 3.74050 3.89574 4.13696 4.86569 4.88781 4.95445 4.96184 5.10265 5.16676 5.36175 5.45054 5.56820 5.64807 5.77251 5.88253 5.90835 6.11348 6.25742 6.38413 6.65326 6.90531 7.45615 7.46864 7.92873 8.06840 8.46569 9.05668 9.39482 9.88341 10.65792 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.004015 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.997602 B = 6973.001746 C = 7836.554102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.120 6.120 3 C -0.168 4.168 4 C -0.085 4.085 5 C -0.174 4.174 6 C -0.072 4.072 7 C -0.191 4.191 8 C 0.249 3.751 9 N -0.718 5.718 10 C 0.111 3.889 11 C 0.429 3.571 12 O -0.591 6.591 13 N -0.551 5.551 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.897 5.897 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.414 0.586 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.395 0.605 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 6.668 0.007 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.120 5.880 3 C -0.284 4.284 4 C -0.109 4.109 5 C -0.196 4.196 6 C -0.093 4.093 7 C -0.215 4.215 8 C 0.138 3.862 9 N -0.349 5.349 10 C -0.017 4.017 11 C 0.214 3.786 12 O -0.477 6.477 13 N -0.186 5.186 14 C -0.434 4.434 15 H 0.122 0.878 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.123 0.877 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.254 0.746 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.229 0.771 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.756 4.959 0.007 16.518 hybrid contribution -0.010 0.711 0.001 0.711 sum -15.766 5.670 0.008 16.755 Atomic orbital electron populations 1.23618 0.95588 1.06683 1.05187 1.85617 1.05512 1.03332 1.93579 1.21064 0.94606 0.96673 1.16097 1.20829 0.97159 0.92940 0.99959 1.20698 0.96373 0.94875 1.07672 1.20899 0.92390 0.98852 0.97117 1.20650 1.00044 0.90540 1.10311 1.17394 0.86106 0.89597 0.93115 1.44702 1.02506 1.08317 1.79361 1.20987 0.81708 0.96941 1.02054 1.19717 0.83533 0.89757 0.85572 1.90522 1.74656 1.25775 1.56737 1.41777 1.03805 1.09978 1.63021 1.19688 0.87160 0.88332 1.48220 0.87764 1.25302 0.97415 0.98122 0.96804 1.69597 1.13311 1.21274 1.49542 0.85876 0.78289 0.80644 0.79200 1.19769 1.20850 1.19764 0.87725 0.90070 0.90070 0.86365 0.86500 0.86121 0.85449 0.74599 0.90475 0.90473 0.77148 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 101.05 0.92 -0.38 16 2 S -0.12 -1.71 21.09 -107.50 -2.27 -3.97 16 3 C -0.17 -2.49 6.12 -38.92 -0.24 -2.72 16 4 C -0.08 -1.05 9.36 -39.39 -0.37 -1.42 16 5 C -0.17 -1.99 10.04 -39.57 -0.40 -2.39 16 6 C -0.07 -0.85 10.04 -39.55 -0.40 -1.25 16 7 C -0.19 -2.65 9.31 -39.41 -0.37 -3.02 16 8 C 0.25 4.00 6.66 -83.50 -0.56 3.45 16 9 N -0.72 -13.03 5.66 -59.62 -0.34 -13.37 16 10 C 0.11 2.01 5.40 -5.19 -0.03 1.99 16 11 C 0.43 10.07 7.85 -10.98 -0.09 9.99 16 12 O -0.59 -15.96 15.24 5.55 0.08 -15.87 16 13 N -0.55 -13.71 5.29 -10.96 -0.06 -13.76 16 14 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 17 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 18 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.08 0.66 7.74 -51.92 -0.40 0.26 16 24 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 25 H 0.12 1.18 5.88 -52.49 -0.31 0.87 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 27 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.13 1.62 6.74 -52.49 -0.35 1.27 16 29 H 0.41 8.27 5.98 -40.82 -0.24 8.02 16 30 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 31 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 32 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -30.60 297.93 -7.78 -38.38 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -3.64 Total: 15.25 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.75 Total: -3.68 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.33 Total: -50.28 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.27 Total: -3.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.60 -7.78 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175110845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds