Wall clock time and date at job start Mon Mar 30 2020 01:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34788 * 117.00051 * 2 1 4 4 O 1.21546 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.47147 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.39902 * 120.14256 * 0.02562 * 5 3 2 7 7 C 1.36522 * 120.08368 * 179.97438 * 6 5 3 8 8 C 1.39195 * 120.37912 * 0.02562 * 7 6 5 9 9 O 1.35704 * 119.85846 * 180.02562 * 8 7 6 10 10 C 1.42905 * 116.99925 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.46583 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00532 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00377 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99812 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47233 * 89.99865 * 15 13 11 17 17 H 1.48505 * 109.47158 * 210.00022 * 15 13 11 18 18 H 1.48502 * 109.47016 * 329.99876 * 15 13 11 19 19 C 1.38710 * 120.28083 * 359.76416 * 8 7 6 20 20 C 1.38475 * 119.91107 * 0.48786 * 19 8 7 21 21 O 1.35638 * 120.18374 * 179.76515 * 20 19 8 22 22 C 1.42903 * 117.00396 * 359.72789 * 21 20 19 23 23 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47510 * 300.00458 * 1 2 3 25 25 H 1.09006 * 109.47244 * 60.00147 * 1 2 3 26 26 H 1.08004 * 119.96276 * 359.97438 * 6 5 3 27 27 H 1.08001 * 119.81334 * 180.02562 * 7 6 5 28 28 H 1.08994 * 109.46801 * 299.99102 * 10 9 8 29 29 H 1.08998 * 109.46979 * 59.99745 * 10 9 8 30 30 H 0.97003 * 120.00509 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.04765 * 180.25296 * 19 8 7 32 32 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 33 33 H 1.09001 * 109.46938 * 59.99691 * 22 21 20 34 34 H 1.09004 * 109.46926 * 299.99812 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5333 1.2780 0.0006 6 6 4.2982 0.1065 0.0006 7 6 5.6615 0.1794 0.0006 8 6 6.3004 1.4161 0.0011 9 8 7.6561 1.4762 0.0006 10 6 8.3606 0.2329 -0.0011 11 6 9.8443 0.4964 -0.0021 12 1 10.2125 1.5117 -0.0019 13 6 10.7319 -0.5587 -0.0032 14 7 12.0267 -0.3289 -0.0036 15 14 10.0951 -2.3149 -0.0042 16 1 9.9257 -2.7792 -1.4046 17 1 11.0665 -3.1941 0.6948 18 1 8.7867 -2.3674 0.6963 19 6 5.5571 2.5873 -0.0033 20 6 4.1737 2.5272 0.0020 21 8 3.4415 3.6690 0.0025 22 6 4.1631 4.9025 0.0035 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 3.8097 -0.8567 0.0006 27 1 6.2477 -0.7277 0.0002 28 1 8.0931 -0.3374 0.8884 29 1 8.0922 -0.3356 -0.8916 30 1 12.6512 -1.0712 -0.0048 31 1 6.0567 3.5447 -0.0070 32 1 3.4595 5.7350 0.0034 33 1 4.7903 4.9572 -0.8862 34 1 4.7898 4.9561 0.8938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190686982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:27 Heat of formation + Delta-G solvation = -132.611872 kcal Electronic energy + Delta-G solvation = -19640.670745 eV Core-core repulsion = 16311.976305 eV Total energy + Delta-G solvation = -3328.694440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72194 -39.64048 -38.68283 -36.35249 -36.08729 -32.96982 -30.97928 -30.12233 -28.57411 -27.81455 -26.95969 -23.71657 -22.97349 -21.61575 -20.64708 -18.56097 -17.68935 -17.11273 -16.85029 -16.32401 -16.00443 -15.81595 -15.69163 -14.99774 -14.78854 -14.50274 -13.86345 -13.49733 -13.32548 -12.96610 -12.59205 -12.50165 -12.36239 -12.04829 -11.61373 -11.48248 -11.19173 -11.06710 -10.92705 -10.75505 -10.30489 -10.25954 -10.06920 -9.48688 -8.86110 -8.49293 -7.94849 -6.33012 -4.36600 0.98171 1.49837 2.75371 2.78914 3.11200 3.17009 3.17866 3.20023 3.84965 3.89387 4.15994 4.83276 4.93444 4.97260 5.03902 5.04685 5.10677 5.17087 5.22422 5.30962 5.41296 5.49745 5.56856 5.68780 6.03051 6.15983 6.32082 6.44006 6.51694 6.56986 6.62927 7.24151 7.31111 7.77224 7.95020 8.33944 8.74838 9.21535 10.79048 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.004623 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.206411 B = 6055.386511 C = 7122.842409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.515 3.485 4 O -0.503 6.503 5 C -0.226 4.226 6 C 0.016 3.984 7 C -0.261 4.261 8 C 0.228 3.772 9 O -0.291 6.291 10 C 0.164 3.836 11 C -0.534 4.534 12 H 0.087 0.913 13 C 0.080 3.920 14 N -0.885 5.885 15 Si 0.873 3.127 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.275 4.275 20 C 0.230 3.770 21 O -0.285 6.285 22 C 0.019 3.981 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.271 0.729 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 1.694 0.023 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.279 6.279 3 C 0.362 3.638 4 O -0.392 6.392 5 C -0.228 4.228 6 C -0.002 4.002 7 C -0.280 4.280 8 C 0.177 3.823 9 O -0.201 6.201 10 C 0.091 3.909 11 C -0.572 4.572 12 H 0.105 0.895 13 C -0.124 4.124 14 N -0.522 5.522 15 Si 0.699 3.301 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.294 4.294 20 C 0.182 3.818 21 O -0.196 6.196 22 C -0.076 4.076 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.946 2.103 0.025 19.062 hybrid contribution -0.057 -1.017 -0.010 1.019 sum -19.003 1.086 0.015 19.034 Atomic orbital electron populations 1.23178 0.76673 1.03263 1.02352 1.86550 1.22988 1.33257 1.85136 1.20807 0.88732 0.81225 0.73061 1.90852 1.66510 1.35611 1.46192 1.18092 0.89161 0.91711 1.23836 1.20747 0.92852 0.97032 0.89618 1.21085 0.95402 0.97894 1.13649 1.19278 0.84708 0.92835 0.85466 1.86155 1.13002 1.37039 1.83942 1.21175 0.93036 0.80269 0.96428 1.20733 0.86422 0.96681 1.53327 0.89472 1.24692 0.94597 0.98990 0.94091 1.69840 1.01194 1.32472 1.48673 0.86899 0.79513 0.84573 0.79165 1.19489 1.20317 1.18820 1.20321 0.91257 0.98834 1.19017 1.18562 0.88821 0.85508 0.88933 1.86297 1.34300 1.12393 1.86568 1.23195 0.98210 0.84162 1.01985 0.88359 0.92127 0.92119 0.84030 0.84265 0.95716 0.96174 0.91892 0.83778 0.88118 0.92153 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.74 9.80 -40.73 -0.40 -5.14 16 3 C 0.52 8.07 7.88 34.35 0.27 8.34 16 4 O -0.50 -8.88 14.95 -26.63 -0.40 -9.28 16 5 C -0.23 -3.57 5.89 -104.85 -0.62 -4.19 16 6 C 0.02 0.23 9.55 -39.58 -0.38 -0.15 16 7 C -0.26 -4.32 8.96 -39.85 -0.36 -4.67 16 8 C 0.23 4.19 6.69 -39.05 -0.26 3.93 16 9 O -0.29 -6.38 10.10 -18.82 -0.19 -6.57 16 10 C 0.16 3.81 3.55 36.00 0.13 3.94 16 11 C -0.53 -14.81 9.99 -34.44 -0.34 -15.15 16 12 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.88 -25.85 13.96 55.43 0.77 -25.07 16 15 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 19 C -0.27 -4.48 8.97 -39.32 -0.35 -4.83 16 20 C 0.23 3.69 6.70 -38.69 -0.26 3.43 16 21 O -0.28 -4.35 8.57 -40.52 -0.35 -4.69 16 22 C 0.02 0.21 9.81 101.05 0.99 1.20 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.14 1.69 7.60 -52.48 -0.40 1.30 16 27 H 0.14 2.25 6.26 -52.49 -0.33 1.92 16 28 H 0.03 0.56 6.70 -51.93 -0.35 0.21 16 29 H 0.02 0.45 7.08 -51.93 -0.37 0.08 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.14 2.11 6.31 -52.49 -0.33 1.77 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 34 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -31.83 297.83 -4.80 -36.64 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.85 Total: -0.87 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.21 Total: -4.61 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.77 Total: -25.07 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.33 Total: -25.68 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.83 -4.80 -36.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190686982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.976 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds