Wall clock time and date at job start Mon Mar 30 2020 01:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76207 * 102.99845 * 2 1 4 4 C 1.39049 * 120.04390 * 359.73394 * 3 2 1 5 5 C 1.38099 * 120.05785 * 179.70008 * 4 3 2 6 6 C 1.38208 * 120.15008 * 0.58526 * 5 4 3 7 7 C 1.38918 * 120.08873 * 359.68841 * 6 5 4 8 8 N 1.39945 * 120.03212 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99869 * 213.28595 * 8 7 6 10 10 O 1.21580 * 119.99988 * 5.31365 * 9 8 7 11 11 N 1.34778 * 119.99266 * 185.31455 * 9 8 7 12 12 C 1.46507 * 119.99527 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47042 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00108 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00199 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99760 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00063 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 60.00268 * 17 15 13 19 19 H 1.48504 * 109.46904 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47029 * 299.99966 * 17 15 13 21 21 C 1.38732 * 119.93932 * 0.02562 * 7 6 5 22 22 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47114 * 299.99766 * 1 2 3 24 24 H 1.08998 * 109.47515 * 59.99759 * 1 2 3 25 25 H 1.08003 * 119.97110 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.92682 * 180.29124 * 5 4 3 27 27 H 1.07998 * 119.95847 * 179.69923 * 6 5 4 28 28 H 0.96999 * 119.99878 * 33.28647 * 8 7 6 29 29 H 0.97001 * 120.00505 * 0.02562 * 11 9 8 30 30 H 1.09001 * 109.47017 * 300.00463 * 12 11 9 31 31 H 1.09001 * 109.47033 * 60.00017 * 12 11 9 32 32 H 0.96998 * 120.00107 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.07267 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1941 2.6660 -0.0056 5 6 1.5044 4.0117 0.0007 6 6 2.8249 4.4196 0.0003 7 6 3.8451 3.4767 0.0001 8 7 5.1818 3.8911 0.0003 9 6 6.1144 3.1588 -0.6404 10 8 5.7817 2.1923 -1.2987 11 7 7.4157 3.4981 -0.5512 12 6 8.4296 2.7017 -1.2472 13 6 9.7936 3.2870 -0.9871 14 1 9.8952 4.1646 -0.3659 15 6 10.9120 2.7027 -1.5430 16 7 10.7882 1.6343 -2.2999 17 14 12.6028 3.4287 -1.2212 18 1 12.8781 3.4139 0.2380 19 1 13.6303 2.6222 -1.9275 20 1 12.6438 4.8272 -1.7186 21 6 3.5376 2.1239 -0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.1612 2.3505 -0.0104 26 1 0.7133 4.7470 0.0011 27 1 3.0640 5.4728 0.0003 28 1 5.4370 4.7054 0.4615 29 1 7.6811 4.2689 -0.0256 30 1 8.3992 1.6753 -0.8817 31 1 8.2275 2.7121 -2.3182 32 1 11.5749 1.2235 -2.6913 33 1 4.3291 1.3891 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244422239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:30 Heat of formation + Delta-G solvation = -5.698187 kcal Electronic energy + Delta-G solvation = -16957.992992 eV Core-core repulsion = 14109.847564 eV Total energy + Delta-G solvation = -2848.145428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19161 -38.31509 -34.67174 -34.11976 -32.38007 -30.96890 -30.09134 -28.68374 -26.95605 -23.35644 -22.92819 -21.89247 -20.24411 -18.35410 -18.04829 -16.33672 -16.08951 -15.88001 -15.26596 -14.80756 -14.50301 -14.27064 -14.01997 -13.94313 -13.57363 -13.14498 -12.86289 -12.68336 -12.00423 -11.98348 -11.74659 -11.55673 -11.00328 -10.91216 -10.43718 -10.33287 -10.18577 -9.58840 -9.45533 -9.42616 -8.76548 -8.17012 -7.78985 -7.39749 -6.17604 -4.24964 1.21814 1.43366 1.47759 2.38236 3.12489 3.24842 3.30100 3.32007 3.54485 3.97302 4.30641 4.82509 4.86632 4.87639 4.93755 5.05436 5.18464 5.18581 5.43878 5.55538 5.56175 5.84588 6.25782 6.36585 6.41269 6.53819 7.01409 7.12845 7.37788 7.47768 7.51048 7.80306 7.97346 8.66296 8.81586 9.16543 9.41950 10.92496 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.035665 B = 0.003621 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.895445 B = 7731.321728 C = 8395.700918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.111 6.111 3 C -0.065 4.065 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.161 4.161 7 C 0.201 3.799 8 N -0.695 5.695 9 C 0.688 3.312 10 O -0.579 6.579 11 N -0.721 5.721 12 C 0.266 3.734 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.102 4.102 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.404 0.596 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.614 4.011 6.991 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.131 5.869 3 C -0.178 4.178 4 C -0.187 4.187 5 C -0.102 4.102 6 C -0.185 4.185 7 C 0.103 3.897 8 N -0.343 5.343 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.372 5.372 12 C 0.145 3.855 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.128 4.128 22 H 0.124 0.876 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.240 0.760 29 H 0.221 0.779 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.995 1.867 6.234 20.079 hybrid contribution 0.411 2.275 0.516 2.368 sum -18.584 4.142 6.750 20.201 Atomic orbital electron populations 1.23663 0.95604 1.06828 1.05460 1.85746 1.05292 1.03338 1.92524 1.21532 0.96115 0.96359 1.03825 1.21006 0.97822 0.93170 1.06724 1.20719 0.95639 0.95119 0.98706 1.20873 0.92095 0.98809 1.06681 1.17371 0.83049 0.92435 0.96879 1.42871 1.05478 1.28865 1.57105 1.16189 0.81533 0.83075 0.80342 1.90916 1.80349 1.29212 1.45115 1.45789 1.04190 1.33439 1.53814 1.19062 0.83436 0.90735 0.92272 1.21162 0.90835 1.13765 1.32587 0.91929 1.24943 0.99528 0.94808 0.94677 1.69965 1.30499 1.20008 1.31660 0.86453 0.82811 0.79030 0.78475 1.20052 1.21035 1.20081 1.20836 0.94991 0.95419 1.01599 0.87602 0.89917 0.89839 0.86169 0.85643 0.85613 0.76045 0.77885 0.95434 0.95471 0.92319 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.15 101.05 0.92 -0.26 16 2 S -0.11 -1.45 22.56 -107.50 -2.43 -3.87 16 3 C -0.07 -0.94 6.11 -39.06 -0.24 -1.18 16 4 C -0.16 -1.91 9.36 -39.33 -0.37 -2.28 16 5 C -0.08 -0.88 10.03 -39.64 -0.40 -1.28 16 6 C -0.16 -1.95 9.96 -39.34 -0.39 -2.34 16 7 C 0.20 3.09 6.28 -83.72 -0.53 2.57 16 8 N -0.70 -10.76 5.35 -14.24 -0.08 -10.84 16 9 C 0.69 14.17 8.30 -86.92 -0.72 13.45 16 10 O -0.58 -14.33 14.03 5.30 0.07 -14.26 16 11 N -0.72 -15.13 5.55 -66.41 -0.37 -15.50 16 12 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 13 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.88 -26.01 13.29 55.43 0.74 -25.28 16 17 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.10 -1.74 8.39 -39.18 -0.33 -2.07 16 22 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.08 0.57 7.76 -51.92 -0.40 0.17 16 24 H 0.08 0.62 7.73 -51.93 -0.40 0.21 16 25 H 0.12 1.10 5.87 -52.48 -0.31 0.79 16 26 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.40 4.67 8.83 -40.82 -0.36 4.31 16 29 H 0.39 6.84 8.34 -40.82 -0.34 6.49 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.14 2.87 6.41 -52.49 -0.34 2.54 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -32.94 300.77 -8.84 -41.78 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.80 Total: 7.42 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.49 Total: 0.29 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.29 Total: -51.61 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.43 Total: -3.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.94 -8.84 -41.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244422239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.082 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds