Wall clock time and date at job start Mon Mar 30 2020 00:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29355 * 124.67274 * 2 1 4 4 C 1.30950 * 117.49151 * 180.27283 * 3 2 1 5 5 C 1.37072 * 113.85159 * 0.02562 * 4 3 2 6 6 C 1.41721 * 126.19230 * 179.97438 * 5 4 3 7 7 C 1.35565 * 119.99873 * 224.24923 * 6 5 4 8 8 C 1.41552 * 119.99581 * 10.59724 * 7 6 5 9 9 O 1.21777 * 120.00111 * 7.24066 * 8 7 6 10 10 N 1.34777 * 119.99814 * 187.23698 * 8 7 6 11 11 C 1.46498 * 120.00120 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46963 * 325.00345 * 11 10 8 13 13 C 1.52998 * 109.46801 * 85.00417 * 11 10 8 14 14 C 1.50696 * 109.47292 * 205.00532 * 11 10 8 15 15 H 1.08006 * 119.99916 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00120 * 180.02562 * 14 11 10 17 17 N 1.31510 * 119.99734 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00113 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46760 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47133 * 119.99637 * 18 16 14 21 21 H 1.48492 * 109.46685 * 239.99750 * 18 16 14 22 22 S 1.70909 * 124.67290 * 180.30748 * 2 1 3 23 23 H 1.09003 * 109.46790 * 269.69143 * 1 2 3 24 24 H 1.08992 * 109.47528 * 29.69533 * 1 2 3 25 25 H 1.08998 * 109.47082 * 149.70036 * 1 2 3 26 26 H 1.08008 * 123.07722 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00403 * 44.25093 * 6 5 4 28 28 H 1.07999 * 120.00341 * 190.59456 * 7 6 5 29 29 H 0.97001 * 119.99487 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47350 * 300.00198 * 13 11 10 31 31 H 1.08995 * 109.47420 * 60.00208 * 13 11 10 32 32 H 1.09005 * 109.46768 * 180.02562 * 13 11 10 33 33 H 0.97005 * 119.99962 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0638 0.0000 4 6 3.5421 0.9001 -0.0055 5 6 3.9353 -0.4130 -0.0112 6 6 5.2710 -0.8865 -0.0183 7 6 5.6253 -1.9032 -0.8422 8 6 4.7325 -2.3419 -1.8492 9 8 3.7049 -1.7245 -2.0630 10 7 5.0199 -3.4429 -2.5715 11 6 4.0957 -3.8973 -3.6134 12 1 3.0704 -3.7000 -3.3008 13 6 4.3855 -3.1468 -4.9148 14 6 4.2772 -5.3767 -3.8355 15 1 5.0083 -5.9237 -3.2586 16 6 3.5108 -6.0318 -4.7760 17 7 2.6210 -5.3656 -5.4789 18 14 3.7362 -7.8655 -5.0519 19 1 4.7927 -8.3767 -4.1420 20 1 2.4587 -8.5689 -4.7723 21 1 4.1370 -8.1084 -6.4609 22 16 2.4793 -1.4056 -0.0075 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3634 0.8926 -0.5090 25 1 -0.3633 -0.8873 -0.5185 26 1 4.2401 1.7244 -0.0064 27 1 6.0067 -0.4376 0.6325 28 1 6.5887 -2.3783 -0.7302 29 1 5.8384 -3.9348 -2.4010 30 1 4.2543 -2.0767 -4.7542 31 1 5.4109 -3.3441 -5.2275 32 1 3.6975 -3.4846 -5.6899 33 1 2.0820 -5.8264 -6.1408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255167021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:54 Heat of formation + Delta-G solvation = 29.858809 kcal Electronic energy + Delta-G solvation = -17622.759171 eV Core-core repulsion = 14776.155611 eV Total energy + Delta-G solvation = -2846.603561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54491 -38.88875 -35.19273 -33.78567 -32.43624 -31.23622 -29.21468 -27.36661 -25.27340 -24.03834 -22.88968 -20.52083 -19.70220 -19.10399 -17.54180 -16.77167 -16.07039 -15.35721 -14.87488 -14.65037 -14.26157 -13.97416 -13.65175 -13.25268 -13.00385 -12.62054 -12.44640 -12.27219 -11.96143 -11.71352 -11.26596 -11.10265 -10.98976 -10.78034 -10.34542 -10.25822 -10.00388 -9.29605 -9.08730 -9.04446 -8.60315 -8.39045 -7.87194 -7.57780 -6.14074 -4.23351 0.44383 1.70469 2.01592 2.28845 3.18223 3.22010 3.29964 3.32530 4.00721 4.20975 4.45129 4.49177 5.12281 5.18323 5.28222 5.35085 5.54276 5.55166 5.67135 5.72220 5.96633 6.28257 6.33276 6.57196 6.82953 6.96822 7.14881 7.45115 7.56182 7.68811 7.90647 8.10399 8.13665 8.65626 8.76549 9.11123 9.44423 10.91843 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.005164 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.312034 B = 5420.830930 C = 5917.608101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.002 4.002 3 N -0.488 5.488 4 C 0.057 3.943 5 C -0.222 4.222 6 C -0.004 4.004 7 C -0.200 4.200 8 C 0.515 3.485 9 O -0.546 6.546 10 N -0.699 5.699 11 C 0.264 3.736 12 H 0.050 0.950 13 C -0.146 4.146 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 S 0.264 5.736 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.169 0.831 27 H 0.138 0.862 28 H 0.131 0.869 29 H 0.388 0.612 30 H 0.014 0.986 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 7.037 11.732 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.274 4.274 3 N -0.204 5.204 4 C -0.101 4.101 5 C -0.345 4.345 6 C -0.026 4.026 7 C -0.225 4.225 8 C 0.303 3.697 9 O -0.428 6.428 10 N -0.345 5.345 11 C 0.162 3.838 12 H 0.067 0.933 13 C -0.204 4.204 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 S 0.526 5.474 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.186 0.814 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.220 0.780 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.034 6.797 11.397 13.310 hybrid contribution 1.419 -0.490 -0.408 1.556 sum 2.453 6.308 10.989 12.906 Atomic orbital electron populations 1.20355 0.86009 1.04034 1.03024 1.27146 1.01828 0.92853 1.05571 1.65878 1.05113 1.31905 1.17529 1.22171 0.90983 0.94570 1.02352 1.23710 0.98732 0.97150 1.14896 1.20427 0.92173 0.93800 0.96210 1.22475 1.01796 1.00208 0.98004 1.17234 0.86575 0.82211 0.83645 1.90888 1.26729 1.55988 1.69233 1.46583 1.24998 1.26155 1.36781 1.18735 0.89438 0.92890 0.82749 0.93258 1.22061 1.00383 0.96439 1.01553 1.21260 1.21881 0.92545 1.21489 0.92077 1.24889 0.94795 0.98651 0.95370 1.69914 1.22632 1.35794 1.23734 0.86404 0.78067 0.84653 0.78042 1.19742 1.20858 1.20881 1.83787 0.95143 1.09474 1.59041 0.90315 0.89833 0.90263 0.81417 0.84432 0.85145 0.77950 0.96672 0.95575 0.89213 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.46 36.01 0.38 -0.52 16 2 C 0.00 -0.03 7.37 -13.32 -0.10 -0.13 16 3 N -0.49 -8.26 10.50 -11.18 -0.12 -8.38 16 4 C 0.06 0.89 11.38 -18.35 -0.21 0.68 16 5 C -0.22 -3.51 4.66 -38.68 -0.18 -3.69 16 6 C 0.00 -0.05 9.92 -39.21 -0.39 -0.44 16 7 C -0.20 -2.92 9.82 -39.27 -0.39 -3.31 16 8 C 0.52 10.06 7.06 -15.00 -0.11 9.96 16 9 O -0.55 -12.31 11.31 5.12 0.06 -12.25 16 10 N -0.70 -14.38 5.06 -57.86 -0.29 -14.67 16 11 C 0.26 6.65 2.56 -69.09 -0.18 6.47 16 12 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 14 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.76 11.32 55.43 0.63 -24.14 16 18 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 S 0.26 4.39 19.51 -107.50 -2.10 2.29 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.17 2.10 8.06 -52.48 -0.42 1.68 16 27 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.39 6.90 8.50 -40.82 -0.35 6.55 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -31.72 298.14 -7.55 -39.27 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.98 Total: 4.85 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.22 Total: -6.92 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.22 Total: -47.19 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.06 Total: -12.25 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.10 Total: 2.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.72 -7.55 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255167021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.125 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds