Wall clock time and date at job start Mon Mar 30 2020 00:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29356 * 124.67720 * 2 1 4 4 C 1.30952 * 117.49588 * 180.26837 * 3 2 1 5 5 C 1.37071 * 113.84749 * 359.97438 * 4 3 2 6 6 C 1.41727 * 126.19359 * 179.97438 * 5 4 3 7 7 C 1.35558 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41541 * 120.00214 * 179.97438 * 7 6 5 9 9 O 1.21778 * 119.99708 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99985 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99931 * 180.02562 * 10 8 7 13 13 C 1.50706 * 109.47129 * 90.00015 * 12 10 8 14 14 H 1.08006 * 119.99901 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00215 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99820 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47223 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46816 * 120.00126 * 17 15 13 20 20 H 1.48494 * 109.47484 * 240.00218 * 17 15 13 21 21 S 1.70918 * 124.67351 * 180.29967 * 2 1 3 22 22 H 1.08997 * 109.46882 * 269.70029 * 1 2 3 23 23 H 1.09000 * 109.46627 * 29.70207 * 1 2 3 24 24 H 1.08996 * 109.47174 * 149.70016 * 1 2 3 25 25 H 1.07998 * 123.07853 * 179.97438 * 4 3 2 26 26 H 1.07997 * 119.99676 * 359.97438 * 6 5 4 27 27 H 1.08005 * 119.99483 * 0.02562 * 7 6 5 28 28 H 1.08995 * 109.47174 * 90.00104 * 11 10 8 29 29 H 1.09004 * 109.47144 * 210.00088 * 11 10 8 30 30 H 1.08997 * 109.47323 * 330.00031 * 11 10 8 31 31 H 1.08997 * 109.46812 * 209.99441 * 12 10 8 32 32 H 1.09000 * 109.47462 * 329.99911 * 12 10 8 33 33 H 0.96992 * 119.99989 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9001 -0.0054 5 6 3.9353 -0.4130 -0.0099 6 6 5.2711 -0.8868 -0.0167 7 6 5.5175 -2.2197 -0.0211 8 6 6.8515 -2.6928 -0.0284 9 8 7.7779 -1.9023 -0.0303 10 7 7.0965 -4.0181 -0.0333 11 6 5.9821 -4.9691 -0.0304 12 6 8.4773 -4.5077 -0.0403 13 6 8.9565 -4.6798 1.3782 14 1 8.2984 -4.4473 2.2024 15 6 10.2349 -5.1341 1.6237 16 7 11.0364 -5.4168 0.6199 17 14 10.8291 -5.3467 3.3818 18 1 9.7445 -4.9629 4.3207 19 1 11.2017 -6.7660 3.6101 20 1 12.0132 -4.4808 3.6123 21 16 2.4794 -1.4056 -0.0074 22 1 -0.3633 -0.0054 1.0276 23 1 -0.3632 0.8927 -0.5092 24 1 -0.3633 -0.8872 -0.5185 25 1 4.2402 1.7242 -0.0063 26 1 6.0926 -0.1857 -0.0192 27 1 4.6959 -2.9208 -0.0198 28 1 5.7007 -5.2021 -1.0573 29 1 6.2859 -5.8834 0.4794 30 1 5.1306 -4.5294 0.4888 31 1 8.5201 -5.4665 -0.5570 32 1 9.1151 -3.7889 -0.5546 33 1 11.9358 -5.7360 0.7926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264820902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:36 Heat of formation + Delta-G solvation = 26.621506 kcal Electronic energy + Delta-G solvation = -16901.724136 eV Core-core repulsion = 14054.980195 eV Total energy + Delta-G solvation = -2846.743941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87556 -39.16891 -35.09026 -34.41822 -32.62649 -31.61694 -28.77705 -27.44870 -25.86537 -24.55467 -23.43509 -21.50094 -19.75886 -18.65776 -17.44592 -16.85855 -16.50268 -15.36144 -15.19965 -15.12072 -14.43997 -14.30225 -14.12639 -13.48938 -13.08392 -12.94884 -12.63754 -12.49774 -12.30801 -12.13761 -11.76882 -11.35877 -11.14393 -10.90029 -10.73224 -10.57827 -10.16551 -9.91799 -9.61555 -9.32685 -9.04118 -8.43902 -8.24965 -7.61361 -6.04334 -4.09186 -0.09176 1.06425 1.49277 1.77243 2.77195 3.29910 3.37439 3.41751 3.89631 3.97359 4.08132 4.45397 4.73562 4.91685 5.03242 5.08097 5.11793 5.13770 5.29537 5.49226 5.56759 5.70948 5.91142 5.95900 6.17769 6.21028 6.33327 7.07671 7.44158 7.49112 7.53056 7.92118 8.23002 8.38703 8.89240 9.06084 9.55839 11.03734 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038408 B = 0.003669 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.831765 B = 7630.160371 C = 7725.760740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.475 5.475 4 C 0.064 3.936 5 C -0.202 4.202 6 C -0.012 4.012 7 C -0.186 4.186 8 C 0.533 3.467 9 O -0.545 6.545 10 N -0.596 5.596 11 C 0.081 3.919 12 C 0.243 3.757 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 S 0.152 5.848 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.184 0.816 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.253 6.512 -2.338 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.189 5.189 4 C -0.092 4.092 5 C -0.323 4.323 6 C -0.034 4.034 7 C -0.210 4.210 8 C 0.323 3.677 9 O -0.425 6.425 10 N -0.327 5.327 11 C -0.063 4.063 12 C 0.124 3.876 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.208 1.208 21 S 0.409 5.591 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.200 0.800 26 H 0.169 0.831 27 H 0.139 0.861 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.139 6.239 -2.388 22.169 hybrid contribution 1.036 0.406 1.004 1.499 sum -20.103 6.645 -1.383 21.218 Atomic orbital electron populations 1.20452 0.85184 1.04236 1.03907 1.27212 1.01953 0.91290 1.03920 1.65986 1.05308 1.31511 1.16064 1.22589 0.90878 0.95268 1.00464 1.24003 0.97913 0.96577 1.13849 1.20551 0.92418 0.96471 0.93984 1.22489 0.98126 0.95904 1.04438 1.16803 0.88756 0.83172 0.78974 1.90806 1.46341 1.54797 1.50591 1.48121 1.09443 1.04806 1.70303 1.21699 0.89562 0.94495 1.00528 1.19322 0.75567 0.95085 0.97604 1.21475 0.98618 1.44079 0.92277 0.92384 1.24945 0.96410 0.95340 0.97472 1.69944 1.07713 1.45189 1.30551 0.86429 0.78823 0.77587 0.84510 1.19802 1.20950 1.20836 1.83928 0.97216 1.11465 1.66471 0.89542 0.89265 0.90046 0.79957 0.83117 0.86059 0.93570 0.90560 0.92435 0.94893 0.93665 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.30 7.37 -13.32 -0.10 0.20 16 3 N -0.47 -5.70 10.50 -11.18 -0.12 -5.82 16 4 C 0.06 0.75 11.38 -18.35 -0.21 0.54 16 5 C -0.20 -2.51 6.26 -38.67 -0.24 -2.75 16 6 C -0.01 -0.17 9.39 -39.21 -0.37 -0.54 16 7 C -0.19 -3.00 8.58 -39.28 -0.34 -3.33 16 8 C 0.53 11.46 7.44 -15.00 -0.11 11.35 16 9 O -0.54 -13.93 15.69 5.12 0.08 -13.85 16 10 N -0.60 -12.98 2.86 -186.42 -0.53 -13.51 16 11 C 0.08 1.30 10.12 59.85 0.61 1.91 16 12 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 13 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 14 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 S 0.15 1.54 21.92 -107.50 -2.36 -0.81 16 22 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.15 2.24 7.46 -52.49 -0.39 1.85 16 27 H 0.12 1.63 5.13 -52.48 -0.27 1.36 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.06 0.76 6.08 -51.93 -0.32 0.45 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -34.50 305.10 -7.30 -41.80 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.86 Total: -3.28 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.83 Total: -0.08 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.09 Total: -45.37 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.36 Total: -0.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.50 -7.30 -41.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264820902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.424 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds