Wall clock time and date at job start Mon Mar 30 2020 01:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47033 * 2 1 4 4 C 1.46496 * 119.99997 * 281.15656 * 3 2 1 5 5 C 1.50700 * 109.47133 * 270.00352 * 4 3 2 6 6 H 1.07999 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99906 * 179.97438 * 5 4 3 8 8 N 1.31503 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99655 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47146 * 90.00358 * 9 7 5 11 11 H 1.48500 * 109.46946 * 209.99717 * 9 7 5 12 12 H 1.48498 * 109.47424 * 329.99987 * 9 7 5 13 13 C 1.34779 * 119.99894 * 101.15827 * 3 2 1 14 14 O 1.21607 * 119.99597 * 187.10781 * 13 3 2 15 15 C 1.47389 * 120.00289 * 7.10931 * 13 3 2 16 16 C 1.39969 * 120.61056 * 327.93343 * 15 13 3 17 17 C 1.38333 * 118.37467 * 180.23508 * 16 15 13 18 18 C 1.38413 * 119.51970 * 359.50475 * 17 16 15 19 19 N 1.31812 * 121.22918 * 0.25317 * 18 17 16 20 20 C 1.32512 * 121.76806 * 0.02562 * 19 18 17 21 21 S 1.76199 * 119.83493 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.46641 * 300.00246 * 1 2 3 23 23 H 1.08995 * 109.46910 * 60.00124 * 1 2 3 24 24 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47113 * 239.99932 * 2 1 3 26 26 H 1.09003 * 109.46840 * 119.99613 * 2 1 3 27 27 H 1.09000 * 109.47081 * 30.00345 * 4 3 2 28 28 H 1.08997 * 109.47153 * 150.00125 * 4 3 2 29 29 H 0.97008 * 120.00022 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.81641 * 359.97438 * 16 15 13 31 31 H 1.07998 * 120.24578 * 179.78344 * 17 16 15 32 32 H 1.08001 * 119.38272 * 180.23164 * 18 17 16 33 33 H 1.40995 * 100.00111 * 89.99993 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0311 2.1537 -1.2447 5 6 3.3497 1.9538 -1.9465 6 1 4.1030 1.3156 -1.5089 7 6 3.5942 2.5858 -3.1473 8 7 4.7450 2.4118 -3.7595 9 14 2.2908 3.6890 -3.9046 10 1 2.4767 5.0800 -3.4189 11 1 2.4167 3.6604 -5.3839 12 1 0.9431 3.2038 -3.5129 13 6 2.4560 1.9413 1.1452 14 8 2.7392 3.1236 1.1743 15 6 2.5913 1.1209 2.3621 16 6 1.7255 0.0465 2.5973 17 6 1.8910 -0.6895 3.7568 18 6 2.9037 -0.3542 4.6387 19 7 3.7126 0.6582 4.3975 20 6 3.5956 1.3998 3.3056 21 16 4.7055 2.7411 3.0339 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.2208 1.8153 -1.8906 28 1 1.8971 3.2112 -1.0174 29 1 4.9170 2.8561 -4.6045 30 1 0.9445 -0.1992 1.8929 31 1 1.2376 -1.5225 3.9703 32 1 3.0333 -0.9327 5.5415 33 1 5.7256 2.0749 2.3243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270932715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:12 Heat of formation + Delta-G solvation = 19.756736 kcal Electronic energy + Delta-G solvation = -18164.815651 eV Core-core repulsion = 15317.774032 eV Total energy + Delta-G solvation = -2847.041619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.85845 -39.97755 -37.26931 -35.11519 -33.81742 -32.54221 -31.80638 -29.72614 -25.97238 -25.14207 -24.33193 -23.69377 -20.75379 -19.34220 -19.13391 -18.33661 -17.92192 -17.21295 -16.91396 -16.19664 -16.14488 -15.60909 -15.28956 -15.06116 -14.68493 -14.38148 -13.83601 -13.53591 -13.47777 -13.23368 -13.16896 -12.55582 -12.42228 -12.32655 -12.16879 -11.95971 -11.75880 -11.12279 -10.85717 -10.82525 -10.55463 -10.20924 -9.48147 -8.84657 -8.35968 -6.41476 -0.62459 -0.09085 0.43785 1.32218 1.37488 1.41953 1.44949 1.79269 2.17992 2.30107 2.65349 2.98955 3.30046 3.59199 3.68233 3.85422 4.02184 4.12163 4.29812 4.38563 4.55826 4.75662 4.77804 4.88704 4.93657 4.97185 4.98963 5.38824 5.44197 5.44581 5.59122 6.20927 6.55191 6.59351 6.63462 7.17351 7.32485 8.80998 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.006728 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.284102 B = 4160.581183 C = 4928.806070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.537 4.537 6 H 0.024 0.976 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.234 1.234 13 C 0.533 3.467 14 O -0.542 6.542 15 C -0.146 4.146 16 C -0.076 4.076 17 C -0.127 4.127 18 C 0.108 3.892 19 N -0.472 5.472 20 C 0.128 3.872 21 S -0.115 6.115 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.268 0.732 30 H 0.193 0.807 31 H 0.204 0.796 32 H 0.209 0.791 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -11.325 14.643 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.056 4.056 3 N -0.323 5.323 4 C 0.105 3.895 5 C -0.576 4.576 6 H 0.042 0.958 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.157 1.157 13 C 0.320 3.680 14 O -0.420 6.420 15 C -0.156 4.156 16 C -0.103 4.103 17 C -0.146 4.146 18 C -0.054 4.054 19 N -0.182 5.182 20 C -0.120 4.120 21 S 0.042 5.958 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.126 0.874 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.209 0.791 31 H 0.221 0.779 32 H 0.226 0.774 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.645 -9.573 15.044 20.767 hybrid contribution 0.007 -0.514 -1.731 1.806 sum -10.639 -10.086 13.313 19.803 Atomic orbital electron populations 1.22246 0.92983 1.04674 1.02773 1.22612 0.96500 0.81782 1.04702 1.47903 1.61724 1.15026 1.07674 1.19325 0.95841 0.92287 0.82009 1.21537 1.00998 1.29252 1.05804 0.95753 1.25847 0.97920 0.97592 0.97222 1.70048 1.25407 1.45245 1.17890 0.85719 0.80549 0.79049 0.77689 1.20190 1.20052 1.15731 1.18372 0.78493 0.87451 0.83720 1.90821 1.49068 1.16956 1.85153 1.21242 0.99751 0.98799 0.95787 1.23042 0.98100 0.90732 0.98411 1.22887 0.98560 1.01068 0.92043 1.23977 0.89463 0.91504 1.00448 1.68274 1.27326 1.05639 1.16984 1.22375 0.97786 0.98575 0.93309 1.87195 1.22704 1.11309 1.74596 0.91330 0.92690 0.87363 0.91288 0.86893 0.92771 0.95831 0.92258 0.79054 0.77870 0.77401 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.16 71.98 0.66 -2.60 16 2 C 0.07 1.83 5.60 86.38 0.48 2.32 16 3 N -0.59 -24.01 2.47 -830.09 -2.05 -26.06 16 4 C 0.23 10.99 4.26 85.63 0.37 11.36 16 5 C -0.54 -31.68 9.94 25.60 0.25 -31.43 16 6 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 7 C 0.01 0.72 5.47 84.66 0.46 1.19 16 8 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 9 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.23 -9.70 6.54 99.48 0.65 -9.05 16 13 C 0.53 22.71 7.19 86.65 0.62 23.33 16 14 O -0.54 -27.74 14.30 -4.05 -0.06 -27.80 16 15 C -0.15 -4.87 5.58 -19.87 -0.11 -4.98 16 16 C -0.08 -1.59 7.57 22.71 0.17 -1.41 16 17 C -0.13 -1.63 10.09 22.33 0.23 -1.41 16 18 C 0.11 1.83 11.16 84.74 0.95 2.78 16 19 N -0.47 -13.38 10.33 -190.86 -1.97 -15.35 16 20 C 0.13 4.45 7.08 85.17 0.60 5.05 16 21 S -0.11 -4.55 23.45 -56.49 -1.32 -5.88 16 22 H 0.07 1.19 7.16 -2.39 -0.02 1.17 16 23 H 0.05 1.25 7.70 -2.39 -0.02 1.23 16 24 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.11 2.57 3.87 -2.59 -0.01 2.56 16 27 H 0.05 2.37 6.67 -2.39 -0.02 2.35 16 28 H 0.02 1.23 6.77 -2.39 -0.02 1.21 16 29 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 30 H 0.19 3.06 3.11 -2.91 -0.01 3.05 16 31 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 32 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.10 3.84 9.55 73.80 0.70 4.55 16 Total: -1.00 -82.83 289.42 3.26 -79.57 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.80 Total: 4.89 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.68 Total: 4.19 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -3.73 Total: -101.19 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.06 Total: -27.80 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.32 Total: -5.88 kcal Total: -82.83 3.26 -79.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270932715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.325 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds