Wall clock time and date at job start Mon Mar 30 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29356 * 124.67720 * 2 1 4 4 C 1.30952 * 117.49588 * 180.26837 * 3 2 1 5 5 C 1.37071 * 113.84749 * 359.97438 * 4 3 2 6 6 C 1.41727 * 126.19359 * 179.97438 * 5 4 3 7 7 C 1.35558 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41547 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21778 * 120.00033 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99816 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00245 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47488 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47201 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00426 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99748 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99578 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47261 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46989 * 120.00111 * 17 15 13 20 20 H 1.48509 * 109.46946 * 239.99814 * 17 15 13 21 21 S 1.70918 * 124.67351 * 180.29967 * 2 1 3 22 22 H 1.08997 * 109.46882 * 269.70029 * 1 2 3 23 23 H 1.09000 * 109.46627 * 29.70207 * 1 2 3 24 24 H 1.08996 * 109.47174 * 149.70016 * 1 2 3 25 25 H 1.07997 * 123.07841 * 180.02562 * 4 3 2 26 26 H 1.08007 * 119.99737 * 359.97438 * 6 5 4 27 27 H 1.07995 * 119.99543 * 0.02562 * 7 6 5 28 28 H 0.97004 * 120.00148 * 359.97438 * 10 8 7 29 29 H 1.08994 * 109.47306 * 300.00053 * 11 10 8 30 30 H 1.09000 * 109.46794 * 59.99954 * 11 10 8 31 31 H 1.09002 * 109.46824 * 300.00087 * 12 11 10 32 32 H 1.08992 * 109.47205 * 59.99935 * 12 11 10 33 33 H 0.96999 * 119.99555 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9001 -0.0054 5 6 3.9353 -0.4130 -0.0099 6 6 5.2711 -0.8868 -0.0167 7 6 5.5175 -2.2197 -0.0211 8 6 6.8516 -2.6928 -0.0284 9 8 7.7779 -1.9023 -0.0303 10 7 7.0966 -4.0181 -0.0333 11 6 8.4773 -4.5077 -0.0403 12 6 8.4759 -6.0377 -0.0441 13 6 9.8962 -6.5414 -0.0507 14 1 10.7177 -5.8404 -0.0516 15 6 10.1468 -7.8972 -0.0545 16 7 9.1464 -8.7509 -0.0519 17 14 11.9074 -8.5215 -0.0619 18 1 12.8418 -7.3674 -0.0633 19 1 12.1441 -9.3494 1.1479 20 1 12.1358 -9.3442 -1.2771 21 16 2.4794 -1.4056 -0.0074 22 1 -0.3633 -0.0054 1.0276 23 1 -0.3632 0.8927 -0.5092 24 1 -0.3633 -0.8872 -0.5185 25 1 4.2402 1.7242 -0.0055 26 1 6.0927 -0.1857 -0.0192 27 1 4.6960 -2.9207 -0.0198 28 1 6.3587 -4.6477 -0.0314 29 1 8.9879 -4.1423 -0.9312 30 1 8.9950 -4.1475 0.8487 31 1 7.9654 -6.4028 0.8471 32 1 7.9580 -6.3983 -0.9328 33 1 9.3228 -9.7047 -0.0542 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273086013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:38 Heat of formation + Delta-G solvation = -15.458243 kcal Electronic energy + Delta-G solvation = -16231.697269 eV Core-core repulsion = 13383.128613 eV Total energy + Delta-G solvation = -2848.568655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97838 -40.61184 -36.75254 -35.65834 -34.82553 -32.57550 -31.59354 -29.22822 -26.88694 -25.31045 -23.94204 -22.67530 -21.10048 -20.67848 -18.86619 -18.61006 -18.03266 -16.69718 -16.51262 -16.47867 -16.19130 -15.97497 -15.09567 -14.85802 -14.77326 -14.40126 -14.24571 -13.63972 -13.51154 -13.22168 -13.07223 -12.96575 -12.52431 -12.30577 -12.27586 -11.81335 -11.68702 -11.47107 -11.07551 -10.67721 -10.61603 -10.19876 -10.04151 -9.23736 -8.24837 -6.35179 -1.10115 0.22279 0.61879 0.63514 1.40857 1.41796 1.55062 1.78139 2.31801 2.40512 2.49961 3.09970 3.17590 3.78760 3.96548 4.04402 4.15950 4.33087 4.48994 4.50857 4.62022 4.66883 4.85061 4.97852 5.05726 5.12825 5.22661 5.28663 5.49703 5.57550 5.78489 6.15723 6.61590 6.62946 6.78299 7.25242 7.34208 8.87348 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.051091 B = 0.002774 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.908787 B =10089.833573 C =10611.992787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.085 3.915 5 C -0.252 4.252 6 C 0.039 3.961 7 C -0.225 4.225 8 C 0.542 3.458 9 O -0.598 6.598 10 N -0.714 5.714 11 C 0.140 3.860 12 C 0.022 3.978 13 C -0.546 4.546 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 S 0.186 5.814 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.201 0.799 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.411 0.589 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.739 15.791 0.134 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.228 4.228 3 N -0.221 5.221 4 C -0.072 4.072 5 C -0.373 4.373 6 C 0.016 3.984 7 C -0.249 4.249 8 C 0.334 3.666 9 O -0.483 6.483 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 S 0.445 5.555 22 H 0.122 0.878 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.218 0.782 26 H 0.165 0.835 27 H 0.162 0.838 28 H 0.247 0.753 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.705 15.532 0.131 25.091 hybrid contribution 1.392 -0.185 0.005 1.404 sum -18.313 15.347 0.136 23.894 Atomic orbital electron populations 1.20723 0.82538 1.05681 1.05419 1.28025 1.03649 0.90984 1.00160 1.66134 1.05538 1.32366 1.18091 1.23004 0.91306 0.95658 0.97271 1.23918 0.97990 0.97507 1.17887 1.20570 0.93312 0.95684 0.88788 1.21946 0.95591 0.97017 1.10315 1.17445 0.90367 0.82295 0.76506 1.90784 1.48082 1.56136 1.53304 1.46094 1.09748 1.07099 1.73414 1.21231 0.81690 0.95613 0.99873 1.19141 0.96749 0.89250 0.96393 1.21502 0.93167 0.92372 1.51442 0.92318 1.25883 1.01830 0.97119 0.94410 1.70063 1.32897 1.02603 1.51073 0.85385 0.79305 0.78352 0.77929 1.18997 1.20169 1.20173 1.83945 0.95808 1.10583 1.65193 0.87783 0.88614 0.87870 0.78250 0.83549 0.83840 0.75304 0.93468 0.93482 0.97267 0.97259 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 71.24 0.74 0.13 16 2 C 0.04 0.67 7.37 88.47 0.65 1.33 16 3 N -0.51 -9.74 10.50 -189.29 -1.99 -11.73 16 4 C 0.08 1.55 11.38 84.55 0.96 2.52 16 5 C -0.25 -4.89 6.26 22.86 0.14 -4.74 16 6 C 0.04 0.88 9.39 22.51 0.21 1.09 16 7 C -0.23 -5.75 9.31 22.47 0.21 -5.54 16 8 C 0.54 18.82 7.56 85.06 0.64 19.46 16 9 O -0.60 -25.22 16.11 -4.60 -0.07 -25.29 16 10 N -0.71 -25.56 5.54 -472.21 -2.62 -28.18 16 11 C 0.14 6.14 5.61 86.38 0.48 6.63 16 12 C 0.02 1.13 5.09 29.85 0.15 1.28 16 13 C -0.55 -30.79 9.11 25.60 0.23 -30.56 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.35 5.46 84.66 0.46 0.82 16 16 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 17 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 S 0.19 2.87 21.93 -56.49 -1.24 1.63 16 22 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.15 3.42 7.46 -2.91 -0.02 3.39 16 27 H 0.14 2.92 7.10 -2.91 -0.02 2.90 16 28 H 0.41 12.50 8.43 -92.71 -0.78 11.72 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.59 309.31 1.64 -68.95 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.34 Total: 10.57 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.90 Total: -7.59 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.32 Total: -94.09 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.07 Total: -25.29 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.24 Total: 1.63 kcal Total: -70.59 1.64 -68.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273086013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.492 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds