Wall clock time and date at job start Mon Mar 30 2020 00:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21615 * 120.00221 * 359.97438 * 14 13 3 16 16 C 1.47388 * 120.00089 * 179.97438 * 14 13 3 17 17 C 1.39978 * 120.61043 * 359.71738 * 16 14 13 18 18 C 1.38332 * 118.37271 * 179.75973 * 17 16 14 19 19 C 1.38405 * 119.52040 * 0.54008 * 18 17 16 20 20 N 1.31818 * 121.23405 * 359.70163 * 19 18 17 21 21 C 1.32515 * 121.76425 * 0.02562 * 20 19 18 22 22 S 1.76192 * 119.83578 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 29 29 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 30 30 H 1.08003 * 120.81196 * 0.02562 * 17 16 14 31 31 H 1.07999 * 120.23868 * 180.23839 * 18 17 16 32 32 H 1.08006 * 119.38799 * 179.71893 * 19 18 17 33 33 H 1.41008 * 100.00280 * 269.98264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3418 2.6318 -0.4318 16 6 0.0453 3.3239 -2.6260 17 6 0.9315 3.3741 -3.7084 18 6 0.5160 4.0002 -4.8698 19 6 -0.7468 4.5641 -4.9262 20 7 -1.5657 4.5112 -3.8946 21 6 -1.2212 3.9195 -2.7601 22 16 -2.3564 3.8779 -1.4132 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8293 -0.0605 2.9501 29 1 2.2718 2.1232 -1.9978 30 1 1.9141 2.9309 -3.6399 31 1 1.1739 4.0529 -5.7246 32 1 -1.0673 5.0564 -5.8325 33 1 -1.9997 5.0731 -0.7554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273830305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:35 Heat of formation + Delta-G solvation = -9.585491 kcal Electronic energy + Delta-G solvation = -17958.406654 eV Core-core repulsion = 15110.092660 eV Total energy + Delta-G solvation = -2848.313994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52062 -39.97353 -36.87911 -34.57131 -33.75523 -32.71351 -32.08399 -28.94390 -25.87932 -24.94473 -24.54287 -22.23041 -21.15519 -19.73355 -18.96086 -17.85216 -17.63422 -17.05934 -16.74265 -16.27771 -16.06445 -15.54963 -15.06605 -14.73050 -14.55188 -14.20318 -13.69906 -13.42858 -13.37939 -13.13083 -12.89039 -12.62919 -12.18634 -12.16190 -12.03201 -11.55534 -11.10361 -11.01523 -10.99412 -10.68051 -10.49928 -10.17853 -9.56089 -8.42696 -8.13224 -6.30729 -0.60739 -0.03510 0.54483 1.46727 1.47961 1.54027 1.55737 2.04208 2.33079 2.55343 2.78618 3.16276 3.51522 3.71397 3.77469 3.93031 4.22836 4.45633 4.55537 4.63347 4.81909 4.85573 4.99699 5.12504 5.32528 5.45861 5.49335 5.59522 5.63805 5.83932 5.95505 6.20170 6.62132 6.76632 6.99210 7.35697 7.57838 8.91584 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026454 B = 0.005559 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.168523 B = 5035.769245 C = 5691.411234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.282 3.718 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.529 3.471 15 O -0.534 6.534 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.131 4.131 19 C 0.110 3.890 20 N -0.473 5.473 21 C 0.131 3.869 22 S -0.104 6.104 23 H 0.028 0.972 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.400 0.600 30 H 0.167 0.833 31 H 0.195 0.805 32 H 0.206 0.794 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 6.568 -16.143 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.313 3.687 15 O -0.412 6.412 16 C -0.161 4.161 17 C -0.080 4.080 18 C -0.150 4.150 19 C -0.052 4.052 20 N -0.183 5.183 21 C -0.117 4.117 22 S 0.053 5.947 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.235 0.765 30 H 0.184 0.816 31 H 0.212 0.788 32 H 0.223 0.777 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.962 6.590 -14.673 16.833 hybrid contribution 2.661 0.313 0.151 2.683 sum -2.301 6.903 -14.521 16.242 Atomic orbital electron populations 1.21673 0.96906 0.98981 1.00457 1.21782 0.93730 0.99136 1.01225 1.18368 0.93577 0.89107 0.81085 0.98069 1.21541 0.91373 1.38982 1.06726 0.90911 1.25736 1.03101 0.94425 0.95071 1.70046 1.37075 1.38289 1.09820 0.85460 0.79346 0.78355 0.77536 1.19784 1.21439 1.18808 1.46222 1.14951 1.55948 1.17725 1.18302 0.82674 0.79820 0.87867 1.90960 1.50471 1.59179 1.40627 1.21279 0.96091 1.02058 0.96624 1.22260 0.99496 0.94863 0.91378 1.22761 0.97908 0.95367 0.98976 1.23897 0.90155 0.94303 0.96847 1.68307 1.35522 1.15058 0.99459 1.22516 0.93682 0.98744 0.96793 1.86933 1.46077 1.35025 1.26660 0.95245 0.93950 0.93832 0.91029 0.94132 0.92657 0.76467 0.81569 0.78775 0.77693 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.82 5.45 30.59 0.17 -5.65 16 3 C 0.28 14.05 2.24 44.24 0.10 14.15 16 4 H 0.00 0.08 7.58 -2.38 -0.02 0.07 16 5 C -0.55 -28.04 8.73 25.60 0.22 -27.81 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.97 41.03 29.54 68.60 2.03 43.05 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -27.77 4.97 -449.39 -2.24 -30.01 16 14 C 0.53 20.90 6.32 86.65 0.55 21.45 16 15 O -0.53 -24.74 10.93 -4.08 -0.04 -24.78 16 16 C -0.15 -4.70 5.91 -19.87 -0.12 -4.82 16 17 C -0.05 -1.09 9.64 22.71 0.22 -0.88 16 18 C -0.13 -1.79 10.09 22.33 0.23 -1.57 16 19 C 0.11 1.82 11.16 84.73 0.95 2.77 16 20 N -0.47 -12.57 10.33 -190.86 -1.97 -14.54 16 21 C 0.13 4.18 7.09 85.17 0.60 4.79 16 22 S -0.10 -3.62 22.91 -56.49 -1.29 -4.92 16 23 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.92 5.64 -2.38 -0.01 1.91 16 26 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.40 13.03 6.64 -92.71 -0.62 12.41 16 30 H 0.17 2.72 6.51 -2.91 -0.02 2.70 16 31 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.21 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.11 3.48 9.55 73.80 0.70 4.19 16 Total: -1.00 -68.39 289.88 1.94 -66.45 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.25 Total: 17.21 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 3.97 Total: -1.17 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.96 Total: -95.84 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.29 Total: -4.92 kcal Total: -68.39 1.94 -66.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273830305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.861 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds