Wall clock time and date at job start Mon Mar 30 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46800 * 129.52909 * 3 2 1 5 5 C 1.36932 * 119.99852 * 263.91003 * 4 3 2 6 6 H 1.08008 * 119.99820 * 199.40418 * 5 4 3 7 7 C 1.38807 * 120.00174 * 19.40288 * 5 4 3 8 8 N 1.31620 * 119.99996 * 22.27183 * 7 5 4 9 9 Si 1.86804 * 120.00332 * 202.27209 * 7 5 4 10 10 H 1.48502 * 109.46896 * 59.99927 * 9 7 5 11 11 H 1.48498 * 109.47238 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46915 * 300.00125 * 9 7 5 13 13 C 1.46506 * 119.99820 * 83.91589 * 4 3 2 14 14 C 1.52997 * 109.47204 * 89.99850 * 13 4 3 15 15 N 1.46498 * 109.46894 * 179.97438 * 14 13 4 16 16 C 1.36309 * 121.38261 * 269.73908 * 15 14 13 17 17 C 1.50702 * 121.64631 * 0.02562 * 16 15 14 18 18 C 1.32568 * 116.71057 * 179.79367 * 16 15 14 19 19 S 1.77226 * 105.32064 * 0.42267 * 18 16 15 20 20 C 1.34244 * 121.38043 * 90.02483 * 15 14 13 21 21 O 1.21829 * 127.05784 * 359.93694 * 20 15 14 22 22 H 4.40637 * 5.51371 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.47534 * 9.52478 * 3 2 1 24 24 H 1.09002 * 109.46994 * 249.52544 * 3 2 1 25 25 H 0.97004 * 120.00214 * 179.97438 * 8 7 5 26 26 H 1.09008 * 109.46603 * 209.99717 * 13 4 3 27 27 H 1.08994 * 109.47120 * 329.99490 * 13 4 3 28 28 H 1.08999 * 109.47235 * 299.99635 * 14 13 4 29 29 H 1.08994 * 109.47377 * 59.99797 * 14 13 4 30 30 H 1.09007 * 109.47187 * 89.99678 * 17 16 15 31 31 H 1.09002 * 109.47299 * 209.99813 * 17 16 15 32 32 H 1.09003 * 109.47144 * 330.00120 * 17 16 15 33 33 H 1.08004 * 127.33911 * 180.16972 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.8800 -1.0654 5 6 3.4808 0.3548 -2.2814 6 1 4.1192 0.9145 -2.9490 7 6 3.0122 -0.8969 -2.6561 8 7 1.9279 -1.3887 -2.0950 9 14 3.9205 -1.8835 -3.9566 10 1 5.3100 -2.1423 -3.5009 11 1 3.2227 -3.1761 -4.1743 12 1 3.9512 -1.1166 -5.2279 13 6 3.2505 2.3212 -0.8296 14 6 4.6435 2.6372 -0.2815 15 7 4.7604 4.0785 -0.0463 16 6 5.2160 4.9213 -1.0159 17 6 5.6216 4.4156 -2.3764 18 6 5.2804 6.2083 -0.7047 19 16 4.7170 6.3132 0.9724 20 6 4.4284 4.6232 1.1349 21 8 4.0085 4.0415 2.1195 22 1 -1.0502 -0.0001 0.0004 23 1 3.0098 -1.0126 -0.1700 24 1 3.0091 0.3603 0.9628 25 1 1.6002 -2.2633 -2.3571 26 1 3.0990 2.8562 -1.7672 27 1 2.4964 2.6335 -0.1072 28 1 4.7950 2.1023 0.6561 29 1 5.3977 2.3250 -1.0038 30 1 4.7574 4.4269 -3.0407 31 1 6.4022 5.0575 -2.7848 32 1 5.9985 3.3967 -2.2878 33 1 5.6102 7.0194 -1.3369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281433759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:29 Heat of formation + Delta-G solvation = 81.319768 kcal Electronic energy + Delta-G solvation = -17921.774831 eV Core-core repulsion = 15077.402785 eV Total energy + Delta-G solvation = -2844.372046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77472 -37.39926 -36.27624 -32.79836 -31.60938 -31.34811 -29.63716 -27.11809 -26.06554 -24.43401 -23.01614 -21.11503 -20.00319 -17.95024 -17.53376 -16.80264 -16.46278 -15.89056 -15.13479 -14.75491 -14.32522 -13.89024 -13.67756 -13.58749 -13.43470 -13.17011 -12.73272 -12.32232 -12.04563 -11.51416 -11.25714 -11.22922 -11.06873 -10.86310 -10.53389 -10.29554 -10.11362 -9.86215 -9.50113 -8.97517 -8.80219 -8.50486 -7.84382 -7.10838 -5.88638 -3.34342 1.10306 1.47876 1.90966 2.36235 2.97627 3.29890 3.37189 3.38210 4.12352 4.36433 4.45803 4.64718 5.05601 5.21652 5.25148 5.41719 5.46835 5.58165 5.63629 5.70071 5.79000 5.87794 6.02420 6.25761 6.32084 6.61676 6.70851 6.98767 7.12080 7.37465 7.51587 7.62970 8.16985 8.98140 9.16934 9.64401 10.11538 11.14213 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.005865 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.083095 B = 4772.607777 C = 5695.500370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.099 4.099 3 C 0.268 3.732 4 N -0.580 5.580 5 C -0.278 4.278 6 H 0.075 0.925 7 C 0.010 3.990 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.140 3.860 14 C 0.075 3.925 15 N -0.525 5.525 16 C 0.117 3.883 17 C -0.103 4.103 18 C -0.255 4.255 19 S -0.027 6.027 20 C 0.483 3.517 21 O -0.473 6.473 22 H 0.191 0.809 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.257 0.743 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 12.033 0.750 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.102 4.102 3 C 0.142 3.858 4 N -0.300 5.300 5 C -0.407 4.407 6 H 0.093 0.907 7 C -0.191 4.191 8 N -0.523 5.523 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.051 4.051 15 N -0.245 5.245 16 C 0.005 3.995 17 C -0.163 4.163 18 C -0.393 4.393 19 S 0.215 5.785 20 C 0.164 3.836 21 O -0.353 6.353 22 H 0.208 0.792 23 H 0.112 0.888 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.081 12.444 2.203 14.486 hybrid contribution 0.148 -1.676 -1.744 2.423 sum 7.229 10.768 0.459 12.977 Atomic orbital electron populations 1.24187 0.95358 1.05496 1.06448 1.24174 0.95272 0.95876 0.94832 1.17774 0.83053 0.96409 0.88528 1.43945 1.74716 0.99878 1.11425 1.19095 1.25340 1.01217 0.95012 0.90716 1.24970 0.95884 0.99619 0.98623 1.70141 1.19067 1.18423 1.44665 0.86408 0.79596 0.79695 0.81300 1.20890 1.21631 1.20891 1.20964 0.92151 0.86886 0.98811 1.23037 1.03288 0.75325 1.03482 1.46223 1.56264 1.10946 1.11077 1.19542 0.97262 0.90130 0.92522 1.20831 1.02805 1.02785 0.89833 1.24735 1.18196 0.98075 0.98286 1.84923 1.71930 1.08482 1.13137 1.21499 0.83625 0.93196 0.85241 1.90957 1.48006 1.65465 1.30841 0.79190 0.88833 0.94283 0.93271 0.92792 0.93882 0.89410 0.88704 0.89301 0.89617 0.89857 0.79550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.94 19.25 29.55 0.57 -6.37 16 2 C -0.10 -2.46 11.50 -37.12 -0.43 -2.88 16 3 C 0.27 6.34 5.41 -6.83 -0.04 6.30 16 4 N -0.58 -13.59 2.49 -176.57 -0.44 -14.03 16 5 C -0.28 -6.98 9.63 -15.06 -0.15 -7.13 16 6 H 0.08 1.78 7.92 -52.48 -0.42 1.36 16 7 C 0.01 0.25 4.82 -17.43 -0.08 0.17 16 8 N -0.88 -24.44 9.61 55.49 0.53 -23.91 16 9 Si 0.90 20.43 29.61 -169.99 -5.03 15.39 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.14 2.80 6.00 -4.04 -0.02 2.77 16 14 C 0.08 1.26 5.60 -4.04 -0.02 1.23 16 15 N -0.53 -8.01 2.60 -117.28 -0.31 -8.32 16 16 C 0.12 1.43 6.59 -82.51 -0.54 0.88 16 17 C -0.10 -1.00 9.69 36.01 0.35 -0.65 16 18 C -0.25 -2.73 11.24 28.83 0.32 -2.41 16 19 S -0.03 -0.35 22.97 -107.50 -2.47 -2.82 16 20 C 0.48 8.14 8.27 53.82 0.45 8.59 16 21 O -0.47 -9.52 17.55 5.07 0.09 -9.43 16 22 H 0.19 3.75 7.80 -54.08 -0.42 3.33 16 23 H 0.09 2.36 6.59 -51.93 -0.34 2.02 16 24 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.05 1.06 8.04 -51.92 -0.42 0.64 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.09 1.57 7.80 -51.93 -0.41 1.16 16 29 H 0.09 1.46 6.11 -51.93 -0.32 1.15 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.08 0.87 6.18 -51.93 -0.32 0.55 16 33 H 0.19 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -30.34 303.41 -6.53 -36.87 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.88 Total: 1.16 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.40 Total: 0.51 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.21 Total: -46.25 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.47 Total: -2.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.34 -6.53 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.193 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds