Wall clock time and date at job start Mon Mar 30 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46800 * 129.52909 * 3 2 1 5 5 C 1.36932 * 119.99852 * 263.91003 * 4 3 2 6 6 H 1.08008 * 119.99820 * 199.40418 * 5 4 3 7 7 C 1.38807 * 120.00174 * 19.40288 * 5 4 3 8 8 N 1.31620 * 119.99996 * 22.27183 * 7 5 4 9 9 Si 1.86804 * 120.00332 * 202.27209 * 7 5 4 10 10 H 1.48502 * 109.46896 * 59.99927 * 9 7 5 11 11 H 1.48498 * 109.47238 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46915 * 300.00125 * 9 7 5 13 13 C 1.46506 * 119.99820 * 83.91589 * 4 3 2 14 14 C 1.52997 * 109.47204 * 89.99850 * 13 4 3 15 15 N 1.46498 * 109.46894 * 179.97438 * 14 13 4 16 16 C 1.36309 * 121.38261 * 269.73908 * 15 14 13 17 17 C 1.50702 * 121.64631 * 0.02562 * 16 15 14 18 18 C 1.32568 * 116.71057 * 179.79367 * 16 15 14 19 19 S 1.77226 * 105.32064 * 0.42267 * 18 16 15 20 20 C 1.34244 * 121.38043 * 90.02483 * 15 14 13 21 21 O 1.21829 * 127.05784 * 359.93694 * 20 15 14 22 22 H 4.40637 * 5.51371 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.47534 * 9.52478 * 3 2 1 24 24 H 1.09002 * 109.46994 * 249.52544 * 3 2 1 25 25 H 0.97004 * 120.00214 * 179.97438 * 8 7 5 26 26 H 1.09008 * 109.46603 * 209.99717 * 13 4 3 27 27 H 1.08994 * 109.47120 * 329.99490 * 13 4 3 28 28 H 1.08999 * 109.47235 * 299.99635 * 14 13 4 29 29 H 1.08994 * 109.47377 * 59.99797 * 14 13 4 30 30 H 1.09007 * 109.47187 * 89.99678 * 17 16 15 31 31 H 1.09002 * 109.47299 * 209.99813 * 17 16 15 32 32 H 1.09003 * 109.47144 * 330.00120 * 17 16 15 33 33 H 1.08004 * 127.33911 * 180.16972 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.8800 -1.0654 5 6 3.4808 0.3548 -2.2814 6 1 4.1192 0.9145 -2.9490 7 6 3.0122 -0.8969 -2.6561 8 7 1.9279 -1.3887 -2.0950 9 14 3.9205 -1.8835 -3.9566 10 1 5.3100 -2.1423 -3.5009 11 1 3.2227 -3.1761 -4.1743 12 1 3.9512 -1.1166 -5.2279 13 6 3.2505 2.3212 -0.8296 14 6 4.6435 2.6372 -0.2815 15 7 4.7604 4.0785 -0.0463 16 6 5.2160 4.9213 -1.0159 17 6 5.6216 4.4156 -2.3764 18 6 5.2804 6.2083 -0.7047 19 16 4.7170 6.3132 0.9724 20 6 4.4284 4.6232 1.1349 21 8 4.0085 4.0415 2.1195 22 1 -1.0502 -0.0001 0.0004 23 1 3.0098 -1.0126 -0.1700 24 1 3.0091 0.3603 0.9628 25 1 1.6002 -2.2633 -2.3571 26 1 3.0990 2.8562 -1.7672 27 1 2.4964 2.6335 -0.1072 28 1 4.7950 2.1023 0.6561 29 1 5.3977 2.3250 -1.0038 30 1 4.7574 4.4269 -3.0407 31 1 6.4022 5.0575 -2.7848 32 1 5.9985 3.3967 -2.2878 33 1 5.6102 7.0194 -1.3369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281433759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:29 Heat of formation + Delta-G solvation = 63.887990 kcal Electronic energy + Delta-G solvation = -17922.530730 eV Core-core repulsion = 15077.402785 eV Total energy + Delta-G solvation = -2845.127945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95111 -38.67690 -38.03146 -34.25711 -33.51334 -32.72589 -31.00874 -28.40263 -27.91217 -25.85717 -24.35791 -22.74699 -21.22510 -19.44370 -18.96836 -18.27607 -18.06044 -17.26378 -16.78959 -16.12819 -15.72250 -15.48289 -15.13453 -14.94978 -14.53397 -14.40901 -14.21789 -13.70250 -13.44439 -13.10347 -13.00384 -12.63484 -12.33763 -12.32314 -12.07250 -12.02435 -11.89068 -11.16549 -10.86934 -10.82745 -10.54172 -10.38116 -9.06017 -8.85191 -7.84367 -5.31636 -0.06704 0.42696 0.91030 1.21430 1.50770 1.54702 1.60072 1.82463 2.28076 2.47075 2.57619 3.27878 3.57427 3.82199 3.88363 4.01774 4.24109 4.28502 4.43304 4.55656 4.71688 4.76105 4.82831 4.85459 4.94289 5.13692 5.23456 5.36210 5.55918 5.66151 5.86498 6.22655 6.32620 7.03278 7.28122 7.74673 8.20894 9.17249 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.005865 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.083095 B = 4772.607777 C = 5695.500370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.138 4.138 3 C 0.271 3.729 4 N -0.592 5.592 5 C -0.277 4.277 6 H 0.089 0.911 7 C -0.044 4.044 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.304 1.304 12 H -0.274 1.274 13 C 0.150 3.850 14 C 0.094 3.906 15 N -0.527 5.527 16 C 0.092 3.908 17 C -0.099 4.099 18 C -0.225 4.225 19 S 0.002 5.998 20 C 0.456 3.544 21 O -0.527 6.527 22 H 0.223 0.777 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.247 0.753 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 14.083 -0.952 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.141 4.141 3 C 0.145 3.855 4 N -0.312 5.312 5 C -0.406 4.406 6 H 0.107 0.893 7 C -0.240 4.240 8 N -0.558 5.558 9 Si 0.794 3.206 10 H -0.201 1.201 11 H -0.231 1.231 12 H -0.200 1.200 13 C 0.022 3.978 14 C -0.034 4.034 15 N -0.247 5.247 16 C -0.018 4.018 17 C -0.158 4.158 18 C -0.362 4.362 19 S 0.244 5.756 20 C 0.139 3.861 21 O -0.411 6.411 22 H 0.240 0.760 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.588 14.567 0.468 16.916 hybrid contribution -0.313 -2.128 -1.216 2.471 sum 8.275 12.439 -0.748 14.958 Atomic orbital electron populations 1.25032 0.96432 1.04222 1.05287 1.24673 0.96273 0.97103 0.96002 1.17672 0.82929 0.95558 0.89306 1.44100 1.74933 1.01160 1.11037 1.19512 1.24438 1.01264 0.95345 0.89286 1.25707 0.96593 1.00765 1.00984 1.70313 1.20736 1.18147 1.46628 0.85381 0.78354 0.77591 0.79291 1.20128 1.23075 1.19995 1.20931 0.93415 0.85053 0.98392 1.22551 1.01368 0.76696 1.02748 1.46230 1.56334 1.10589 1.11583 1.20040 0.98375 0.90397 0.93005 1.20918 1.03750 1.02943 0.88184 1.25397 1.15533 0.98493 0.96745 1.84868 1.71108 1.04471 1.15129 1.22087 0.83872 0.94915 0.85189 1.90916 1.50310 1.67377 1.32487 0.76027 0.90930 0.92965 0.94331 0.92381 0.96102 0.91135 0.86992 0.89375 0.86074 0.90869 0.75167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.68 19.25 74.32 1.43 -12.25 16 2 C -0.14 -7.00 11.50 31.13 0.36 -6.65 16 3 C 0.27 13.23 5.41 84.58 0.46 13.69 16 4 N -0.59 -28.03 2.49 -712.54 -1.77 -29.80 16 5 C -0.28 -13.78 9.63 84.03 0.81 -12.97 16 6 H 0.09 4.09 7.92 -2.91 -0.02 4.06 16 7 C -0.04 -2.27 4.82 84.86 0.41 -1.86 16 8 N -0.91 -51.63 9.61 21.65 0.21 -51.42 16 9 Si 0.97 42.00 29.61 68.60 2.03 44.04 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 C 0.15 5.99 6.00 86.38 0.52 6.51 16 14 C 0.09 3.11 5.60 86.38 0.48 3.59 16 15 N -0.53 -15.61 2.60 -643.43 -1.68 -17.28 16 16 C 0.09 1.96 6.59 40.71 0.27 2.22 16 17 C -0.10 -1.55 9.69 71.24 0.69 -0.86 16 18 C -0.22 -3.87 11.24 66.67 0.75 -3.12 16 19 S 0.00 0.04 22.97 -56.49 -1.30 -1.26 16 20 C 0.46 15.36 8.27 129.87 1.07 16.44 16 21 O -0.53 -22.07 17.55 -4.76 -0.08 -22.15 16 22 H 0.22 8.49 7.80 -4.41 -0.03 8.45 16 23 H 0.07 3.82 6.59 -2.39 -0.02 3.80 16 24 H 0.05 2.34 8.12 -2.39 -0.02 2.32 16 25 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 26 H 0.06 2.25 8.04 -2.38 -0.02 2.23 16 27 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 28 H 0.07 2.60 7.80 -2.39 -0.02 2.58 16 29 H 0.11 3.33 6.11 -2.39 -0.01 3.31 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.12 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.07 1.32 6.18 -2.39 -0.01 1.31 16 33 H 0.23 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -67.18 303.41 5.77 -61.41 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.11 Total: 11.72 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 7.25 Total: 4.74 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.24 Total: -98.50 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.08 Total: -22.15 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.30 Total: -1.26 kcal Total: -67.18 5.77 -61.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.296 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds