Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76197 * 103.00374 * 2 1 4 4 C 1.39459 * 120.42667 * 179.97438 * 3 2 1 5 5 C 1.38283 * 118.43055 * 180.02562 * 4 3 2 6 6 C 1.39036 * 119.18510 * 0.02562 * 5 4 3 7 7 N 1.39626 * 119.61274 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00545 * 174.90938 * 7 6 5 9 9 O 1.21289 * 119.99600 * 5.09440 * 8 7 6 10 10 C 1.50693 * 120.00432 * 185.08856 * 8 7 6 11 11 C 1.53000 * 109.47261 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47260 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99914 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99968 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47025 * 89.99916 * 16 14 12 18 18 H 1.48495 * 109.47093 * 209.99993 * 16 14 12 19 19 H 1.48502 * 109.46790 * 330.00490 * 16 14 12 20 20 N 1.32308 * 120.77842 * 359.97438 * 6 5 4 21 21 C 1.31913 * 121.71662 * 0.02562 * 20 6 5 22 22 H 1.08997 * 109.47343 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47159 * 300.00050 * 1 2 3 24 24 H 1.09004 * 109.46948 * 59.99646 * 1 2 3 25 25 H 1.07998 * 120.78217 * 0.02562 * 4 3 2 26 26 H 1.07996 * 120.41001 * 179.72460 * 5 4 3 27 27 H 0.97000 * 119.99769 * 354.91862 * 7 6 5 28 28 H 1.08995 * 109.47710 * 300.00130 * 10 8 7 29 29 H 1.09000 * 109.47030 * 60.00855 * 10 8 7 30 30 H 1.09004 * 109.47277 * 299.99975 * 11 10 8 31 31 H 1.09005 * 109.47002 * 60.00216 * 11 10 8 32 32 H 0.97005 * 119.99803 * 179.97438 * 15 14 12 33 33 H 1.08001 * 119.62735 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5410 2.1344 0.0005 5 6 3.8051 3.4917 0.0011 6 6 2.7430 4.3890 0.0016 7 7 2.9994 5.7615 0.0026 8 6 1.9804 6.6376 -0.1004 9 8 0.8352 6.2382 -0.1010 10 6 2.2639 8.1132 -0.2148 11 6 0.9437 8.8797 -0.3170 12 6 1.2272 10.3555 -0.4307 13 1 2.2470 10.7110 -0.4306 14 6 0.1847 11.2517 -0.5360 15 7 -1.0571 10.8186 -0.5367 16 14 0.5361 13.0808 -0.6777 17 1 0.6704 13.4496 -2.1100 18 1 -0.5817 13.8480 -0.0718 19 1 1.7990 13.3989 0.0358 20 7 1.4922 3.9576 0.0011 21 6 1.2025 2.6707 0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.3462 1.4146 0.0005 26 1 4.8237 3.8505 0.0060 27 1 3.9110 6.0846 0.0774 28 1 2.8104 8.4476 0.6670 29 1 2.8628 8.3001 -1.1061 30 1 0.3968 8.5455 -1.1986 31 1 0.3451 8.6928 0.5746 32 1 -1.7906 11.4492 -0.6104 33 1 0.1694 2.3560 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291647133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -21.823003 kcal Electronic energy + Delta-G solvation = -16866.303762 eV Core-core repulsion = 14017.459110 eV Total energy + Delta-G solvation = -2848.844652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77065 -40.07173 -36.05107 -35.54422 -33.56178 -33.07457 -31.48978 -29.72119 -27.83762 -25.16602 -24.67156 -23.19455 -21.21757 -19.19180 -18.82224 -18.51345 -17.78327 -16.77696 -16.61904 -16.48225 -15.93926 -15.56495 -15.39722 -14.98310 -14.54645 -14.36571 -14.12443 -14.05276 -13.72975 -13.26651 -12.97479 -12.82661 -12.47845 -12.17671 -11.91946 -11.74568 -11.64497 -11.31928 -11.08091 -11.05805 -10.57163 -10.01668 -9.98063 -8.26226 -8.18306 -6.32615 -0.11843 0.25879 0.53446 1.39695 1.42313 1.45180 1.56061 1.68207 1.93219 2.43122 2.77374 3.14911 3.34427 3.79411 3.87585 3.95920 4.13522 4.22724 4.28169 4.47320 4.53962 4.60834 4.71638 4.85151 4.92295 5.06187 5.17584 5.49008 5.61285 5.68657 5.84615 6.16111 6.21610 6.85882 6.97124 7.37061 7.38095 8.94447 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.003219 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.728207 B = 8696.301255 C = 9236.533638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.105 6.105 3 C -0.179 4.179 4 C -0.029 4.029 5 C -0.171 4.171 6 C 0.330 3.670 7 N -0.650 5.650 8 C 0.499 3.501 9 O -0.526 6.526 10 C -0.114 4.114 11 C 0.041 3.959 12 C -0.542 4.542 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.975 3.025 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.253 1.253 20 N -0.514 5.514 21 C 0.103 3.897 22 H 0.132 0.868 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.176 0.824 26 H 0.185 0.815 27 H 0.438 0.562 28 H 0.112 0.888 29 H 0.111 0.889 30 H -0.019 1.019 31 H -0.018 1.018 32 H 0.262 0.738 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.351 -21.134 1.399 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.134 5.866 3 C -0.295 4.295 4 C -0.060 4.060 5 C -0.196 4.196 6 C 0.097 3.903 7 N -0.299 5.299 8 C 0.288 3.712 9 O -0.398 6.398 10 C -0.154 4.154 11 C 0.004 3.996 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.177 1.177 20 N -0.229 5.229 21 C -0.060 4.060 22 H 0.150 0.850 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.193 0.807 26 H 0.202 0.798 27 H 0.279 0.721 28 H 0.130 0.870 29 H 0.129 0.871 30 H -0.001 1.001 31 H 0.000 1.000 32 H 0.071 0.929 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.314 -21.664 1.377 24.957 hybrid contribution -0.566 1.632 -0.061 1.729 sum 11.749 -20.031 1.317 23.260 Atomic orbital electron populations 1.23804 0.92792 1.08737 1.06170 1.85177 1.08720 0.99984 1.92726 1.22882 0.98084 0.99062 1.09493 1.21393 0.94912 0.95679 0.94032 1.21797 1.00056 0.92305 1.05394 1.19035 0.90014 0.85684 0.95533 1.43730 1.12072 1.02395 1.71708 1.21785 0.84769 0.89910 0.74781 1.90765 1.22957 1.80249 1.45792 1.21672 1.01008 0.87364 1.05340 1.18700 0.92014 0.94259 0.94660 1.21715 0.93836 0.92164 1.50281 0.90271 1.26167 0.94716 1.04986 0.94727 1.70190 0.99778 1.36600 1.51297 0.85302 0.78272 0.77949 0.78600 1.19735 1.21319 1.17710 1.67523 1.21802 1.18038 1.15509 1.22889 0.99744 0.86646 0.96735 0.84961 0.89442 0.89523 0.80704 0.79816 0.72119 0.87012 0.87086 1.00082 0.99997 0.92896 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.16 113.37 1.04 -0.85 16 2 S -0.11 -1.79 22.58 -56.49 -1.28 -3.06 16 3 C -0.18 -3.97 6.13 22.69 0.14 -3.83 16 4 C -0.03 -0.53 9.93 22.57 0.22 -0.30 16 5 C -0.17 -3.24 9.93 22.47 0.22 -3.02 16 6 C 0.33 9.70 7.43 132.85 0.99 10.69 16 7 N -0.65 -18.35 5.40 -308.31 -1.66 -20.01 16 8 C 0.50 19.93 7.79 87.66 0.68 20.61 16 9 O -0.53 -27.10 14.25 -3.06 -0.04 -27.14 16 10 C -0.11 -4.49 5.64 29.85 0.17 -4.33 16 11 C 0.04 2.31 4.26 29.85 0.13 2.44 16 12 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 13 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 14 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 15 N -0.94 -60.10 13.29 21.45 0.28 -59.81 16 16 Si 0.98 44.31 29.54 68.60 2.03 46.34 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 20 N -0.51 -18.66 7.88 -192.35 -1.52 -20.17 16 21 C 0.10 2.96 10.53 84.81 0.89 3.85 16 22 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 1.15 7.76 -2.39 -0.02 1.13 16 24 H 0.09 1.15 7.76 -2.39 -0.02 1.14 16 25 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 26 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 27 H 0.44 7.62 8.70 -92.71 -0.81 6.81 16 28 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 30 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 31 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 32 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 33 H 0.16 4.06 5.89 -2.91 -0.02 4.04 16 Total: -1.00 -84.04 302.53 3.31 -80.73 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.32 Total: 8.44 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 5.18 Total: -5.29 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -2.89 Total: -100.00 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -1.28 Total: -3.06 kcal Total: -84.04 3.31 -80.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291647133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.902 kcal (2) G-P(sol) polarization free energy of solvation -84.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds