Wall clock time and date at job start Mon Mar 30 2020 00:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99959 * 2 1 4 4 N 1.46503 * 109.46665 * 125.00291 * 3 2 1 5 5 C 1.46498 * 120.00030 * 263.02067 * 4 3 2 6 6 C 1.50699 * 109.47310 * 270.00664 * 5 4 3 7 7 H 1.07998 * 119.99941 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00086 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99697 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00182 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47055 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47168 * 119.99950 * 10 8 6 13 13 H 1.48502 * 109.47400 * 239.99989 * 10 8 6 14 14 C 1.34772 * 119.99672 * 83.02910 * 4 3 2 15 15 O 1.21584 * 119.99812 * 183.33159 * 14 4 3 16 16 C 1.47690 * 120.00469 * 3.32489 * 14 4 3 17 17 C 1.39478 * 122.10543 * 173.40526 * 16 14 4 18 18 C 1.34997 * 111.68846 * 180.27264 * 17 16 14 19 19 C 1.50703 * 127.27956 * 180.02562 * 18 17 16 20 20 S 1.71759 * 105.44903 * 0.02562 * 18 17 16 21 21 N 1.30602 * 122.10253 * 353.70143 * 16 14 4 22 22 H 1.07995 * 119.99794 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.99954 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00240 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46624 * 5.00610 * 3 2 1 26 26 H 1.08998 * 109.47346 * 245.00614 * 3 2 1 27 27 H 1.09002 * 109.47328 * 30.00364 * 5 4 3 28 28 H 1.09004 * 109.47005 * 150.00158 * 5 4 3 29 29 H 0.97003 * 119.99685 * 180.02562 * 9 8 6 30 30 H 1.08003 * 124.15902 * 0.27296 * 17 16 14 31 31 H 1.08999 * 109.46981 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.46911 * 299.97586 * 19 18 17 33 33 H 1.09005 * 109.46412 * 59.97281 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6128 2.0015 2.3774 6 6 3.0358 3.4468 2.3206 7 1 3.5386 3.8283 1.4442 8 6 2.7818 4.2819 3.3879 9 7 2.1700 3.8172 4.4554 10 14 3.3068 6.0732 3.3179 11 1 3.9714 6.3438 2.0178 12 1 2.1122 6.9449 3.4546 13 1 4.2546 6.3551 4.4258 14 6 4.2002 0.7404 1.0259 15 8 4.9481 0.7096 1.9841 16 6 4.6139 0.1294 -0.2535 17 6 5.8993 -0.3736 -0.4535 18 6 6.0503 -0.8769 -1.6970 19 6 7.2882 -1.5052 -2.2833 20 16 4.5333 -0.6498 -2.4697 21 7 3.8007 0.0313 -1.2707 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 1.5318 1.9441 2.5049 28 1 3.1043 1.5118 3.2181 29 1 1.9910 4.4048 5.2061 30 1 6.6783 -0.3618 0.2946 31 1 7.0883 -1.8125 -3.3098 32 1 8.1030 -0.7813 -2.2728 33 1 7.5686 -2.3765 -1.6912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292273562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:45 Heat of formation + Delta-G solvation = 39.178534 kcal Electronic energy + Delta-G solvation = -17816.841368 eV Core-core repulsion = 14970.641941 eV Total energy + Delta-G solvation = -2846.199427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18415 -37.82407 -35.70315 -33.32385 -33.05911 -31.96488 -28.18394 -27.91079 -25.75572 -24.82569 -22.47779 -20.37683 -19.82190 -18.70769 -18.10380 -16.48014 -16.43540 -15.31371 -15.19756 -14.49624 -14.43803 -14.10760 -13.81764 -13.11841 -13.01169 -12.85411 -12.73563 -12.68099 -12.15545 -11.66811 -11.28119 -11.00282 -10.99445 -10.83113 -10.60165 -10.40451 -10.18684 -9.60140 -9.42977 -9.12604 -8.87632 -8.65031 -8.42935 -7.67115 -6.03932 -4.08927 0.70775 1.49550 1.99087 2.05197 2.63020 3.30595 3.37834 3.42263 3.80701 3.99156 4.44685 4.66981 4.96685 5.19339 5.27603 5.31336 5.32323 5.42731 5.59462 5.64468 5.82705 5.93655 5.98428 6.24720 6.45527 6.48089 6.97176 7.03259 7.14788 7.43628 7.55409 7.92416 8.22213 8.35419 8.85008 9.01656 9.55959 11.04189 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.005862 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.281817 B = 4775.492774 C = 5489.486505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C 0.132 3.868 4 N -0.570 5.570 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.574 3.426 15 O -0.531 6.531 16 C 0.069 3.931 17 C -0.141 4.141 18 C -0.246 4.246 19 C -0.071 4.071 20 S 0.407 5.593 21 N -0.502 5.502 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.168 0.832 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 -10.662 -15.814 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.157 4.157 3 C 0.007 3.993 4 N -0.300 5.300 5 C 0.126 3.874 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.355 3.645 15 O -0.408 6.408 16 C -0.105 4.105 17 C -0.174 4.174 18 C -0.377 4.377 19 C -0.130 4.130 20 S 0.563 5.437 21 N -0.335 5.335 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.186 0.814 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.805 -10.586 -16.530 19.829 hybrid contribution 1.383 1.121 1.562 2.369 sum 4.188 -9.465 -14.968 18.198 Atomic orbital electron populations 1.23733 0.95797 1.01409 1.02888 1.23250 0.95711 0.98985 0.97744 1.20990 0.92754 0.94765 0.90749 1.48126 1.13515 1.51846 1.16481 1.19408 0.96185 0.91815 0.79986 1.21459 1.38507 0.94286 1.02348 0.92342 1.24929 0.95051 0.98975 0.95067 1.69950 1.41574 1.35903 1.05793 0.86429 0.78300 0.84486 0.78134 1.19806 1.20920 1.20830 1.17264 0.82686 0.79356 0.85162 1.90774 1.52554 1.59768 1.37660 1.21522 0.91241 1.02706 0.95081 1.21260 0.97564 1.00955 0.97618 1.25978 1.04878 1.07192 0.99644 1.20172 0.92216 1.00354 1.00245 1.80533 0.96177 1.47003 1.20006 1.73197 1.32403 1.21957 1.05927 0.89090 0.88505 0.88345 0.90029 0.87711 0.94560 0.93542 0.92732 0.81412 0.91109 0.90335 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 14.32 29.01 0.42 -2.55 16 2 C -0.14 -2.29 8.80 -36.02 -0.32 -2.61 16 3 C 0.13 2.49 5.45 -5.19 -0.03 2.47 16 4 N -0.57 -13.06 2.46 -177.60 -0.44 -13.50 16 5 C 0.24 6.62 5.15 -5.20 -0.03 6.60 16 6 C -0.53 -15.24 9.39 -34.44 -0.32 -15.57 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.57 12.97 7.59 -12.40 -0.09 12.87 16 15 O -0.53 -13.77 16.23 5.29 0.09 -13.68 16 16 C 0.07 1.24 6.49 -84.07 -0.55 0.69 16 17 C -0.14 -2.12 9.93 -40.27 -0.40 -2.52 16 18 C -0.25 -2.82 6.58 -35.46 -0.23 -3.06 16 19 C -0.07 -0.54 10.46 36.01 0.38 -0.16 16 20 S 0.41 4.60 23.20 -107.50 -2.49 2.10 16 21 N -0.50 -7.80 6.14 24.84 0.15 -7.64 16 22 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 23 H 0.10 1.39 7.84 -52.49 -0.41 0.98 16 24 H 0.10 1.65 7.64 -52.48 -0.40 1.25 16 25 H 0.08 1.56 7.67 -51.93 -0.40 1.16 16 26 H 0.11 1.88 5.30 -51.93 -0.28 1.61 16 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.17 2.48 8.00 -52.48 -0.42 2.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -32.82 302.31 -7.64 -40.46 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.94 Total: -1.16 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.27 Total: -2.14 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.45 Total: -47.21 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -2.49 Total: 2.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.82 -7.64 -40.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292273562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.638 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds