Wall clock time and date at job start Mon Mar 30 2020 00:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99895 * 2 1 4 4 N 1.46501 * 109.46965 * 125.00312 * 3 2 1 5 5 C 1.46503 * 119.99520 * 274.57238 * 4 3 2 6 6 C 1.50700 * 109.47019 * 269.99783 * 5 4 3 7 7 H 1.08000 * 120.00385 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99668 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99802 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46707 * 90.00195 * 10 8 6 12 12 H 1.48500 * 109.46992 * 210.00318 * 10 8 6 13 13 H 1.48500 * 109.47197 * 330.00393 * 10 8 6 14 14 C 1.34774 * 120.00374 * 94.57276 * 4 3 2 15 15 O 1.21619 * 119.99617 * 4.99564 * 14 4 3 16 16 C 1.47334 * 120.00227 * 184.98825 * 14 4 3 17 17 C 1.37900 * 123.09034 * 306.91678 * 16 14 4 18 18 S 1.72014 * 105.36727 * 179.97438 * 17 16 14 19 19 N 1.69482 * 96.02798 * 0.02562 * 18 17 16 20 20 C 1.29512 * 107.84439 * 0.02562 * 19 18 17 21 21 C 1.50698 * 121.53686 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99969 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.00030 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.99969 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47473 * 4.99621 * 3 2 1 26 26 H 1.09007 * 109.46912 * 244.99962 * 3 2 1 27 27 H 1.08991 * 109.47390 * 30.00334 * 5 4 3 28 28 H 1.09004 * 109.46623 * 150.00224 * 5 4 3 29 29 H 0.96998 * 119.99989 * 180.02562 * 9 8 6 30 30 H 1.08001 * 127.31439 * 0.22239 * 17 16 14 31 31 H 1.09007 * 109.47121 * 90.01804 * 21 20 19 32 32 H 1.08999 * 109.47623 * 210.02333 * 21 20 19 33 33 H 1.09008 * 109.46815 * 330.02719 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5307 1.7709 2.4501 6 6 2.7248 3.2597 2.5806 7 1 3.1501 3.8226 1.7629 8 6 2.3584 3.9033 3.7436 9 7 1.8401 3.2180 4.7392 10 14 2.5983 5.7488 3.9051 11 1 1.3798 6.4500 3.4266 12 1 2.8409 6.0937 5.3290 13 1 3.7647 6.1698 3.0881 14 6 4.2755 0.9525 0.9591 15 8 4.6834 0.6751 -0.1526 16 6 5.1827 0.8740 2.1174 17 6 5.3741 1.9196 2.9960 18 16 6.5057 1.3400 4.1546 19 7 6.6854 -0.2010 3.4725 20 6 5.9262 -0.2624 2.4250 21 6 5.8501 -1.5068 1.5785 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 1.4735 1.5311 2.5624 28 1 3.1034 1.2606 3.2247 29 1 1.5820 3.6708 5.5572 30 1 4.9089 2.8938 2.9656 31 1 5.0582 -2.1545 1.9551 32 1 5.6342 -1.2315 0.5462 33 1 6.8028 -2.0348 1.6222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293908515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:51 Heat of formation + Delta-G solvation = 21.628932 kcal Electronic energy + Delta-G solvation = -18248.527783 eV Core-core repulsion = 15401.567349 eV Total energy + Delta-G solvation = -2846.960435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82997 -37.70687 -35.53334 -33.66483 -32.32130 -30.91823 -29.29171 -27.64512 -25.94972 -23.54641 -22.87810 -20.52281 -19.47196 -18.55426 -17.16749 -16.67496 -16.17521 -15.61410 -14.73543 -14.57756 -14.50734 -14.10384 -13.64744 -13.17943 -12.72839 -12.63130 -12.22313 -12.10199 -11.91083 -11.49232 -11.47001 -11.17841 -10.97574 -10.91279 -10.84050 -10.38102 -10.28580 -9.90479 -9.36792 -9.11288 -8.95919 -8.68958 -8.18491 -7.86021 -6.33186 -4.42237 1.12919 1.93653 2.21638 2.50683 2.51445 3.12036 3.21047 3.22334 3.50464 3.98897 4.21849 4.96258 5.04684 5.22989 5.40139 5.50675 5.58451 5.72722 5.82742 5.94168 6.03880 6.14100 6.26491 6.28946 6.45421 6.64375 6.87727 6.98920 7.05669 7.11695 7.44177 7.61089 7.91358 8.18305 8.63609 8.85735 9.24559 10.72378 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.010331 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.947382 B = 2709.559183 C = 4371.767854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.142 3.858 4 N -0.583 5.583 5 C 0.235 3.765 6 C -0.547 4.547 7 H 0.064 0.936 8 C 0.069 3.931 9 N -0.879 5.879 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.590 3.410 15 O -0.564 6.564 16 C -0.217 4.217 17 C -0.122 4.122 18 S 0.246 5.754 19 N -0.485 5.485 20 C 0.157 3.843 21 C -0.091 4.091 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.268 0.732 30 H 0.214 0.786 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -4.200 -3.563 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.312 5.312 5 C 0.115 3.885 6 C -0.585 4.585 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.516 5.516 10 Si 0.717 3.283 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.376 3.624 15 O -0.446 6.446 16 C -0.237 4.237 17 C -0.271 4.271 18 S 0.401 5.599 19 N -0.306 5.306 20 C -0.022 4.022 21 C -0.153 4.153 22 H 0.116 0.884 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.847 -4.514 -2.162 6.312 hybrid contribution -1.331 1.219 -0.983 2.055 sum 2.516 -3.295 -3.145 5.203 Atomic orbital electron populations 1.23777 0.95773 1.01619 1.01540 1.23355 0.96111 0.99167 0.99007 1.20457 0.92188 0.94894 0.90522 1.48105 1.08098 1.62423 1.12533 1.19509 0.96388 0.94859 0.77740 1.21507 1.43301 0.92803 1.00911 0.91757 1.24970 0.94588 0.98531 0.95534 1.69921 1.40415 1.36152 1.05127 0.86606 0.79067 0.84959 0.77671 1.20246 1.20791 1.19508 1.17353 0.81664 0.76597 0.86819 1.90674 1.76364 1.52425 1.25092 1.20191 1.06400 0.94860 1.02200 1.28245 0.97972 1.05648 0.95191 1.83836 1.37967 1.06659 1.31469 1.76313 1.26561 1.13558 1.14141 1.21260 0.91578 0.96548 0.92800 1.20685 1.03080 0.92151 0.99368 0.88410 0.88843 0.87799 0.89825 0.89580 0.94414 0.94229 0.92213 0.76978 0.90383 0.88641 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.21 16 2 C -0.16 -2.48 9.84 -36.03 -0.35 -2.83 16 3 C 0.14 2.53 5.93 -5.20 -0.03 2.50 16 4 N -0.58 -11.94 2.44 -177.74 -0.43 -12.37 16 5 C 0.23 5.36 4.73 -5.19 -0.02 5.33 16 6 C -0.55 -13.11 6.74 -34.44 -0.23 -13.34 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.88 -22.85 13.29 55.43 0.74 -22.11 16 10 Si 0.89 19.16 29.54 -169.99 -5.02 14.14 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 C 0.59 12.28 6.84 -12.56 -0.09 12.19 16 15 O -0.56 -12.31 14.95 5.26 0.08 -12.23 16 16 C -0.22 -4.32 4.69 -105.95 -0.50 -4.82 16 17 C -0.12 -2.39 9.15 30.61 0.28 -2.11 16 18 S 0.25 4.28 23.69 -107.50 -2.55 1.74 16 19 N -0.48 -8.95 11.97 32.50 0.39 -8.56 16 20 C 0.16 2.89 6.75 -83.20 -0.56 2.33 16 21 C -0.09 -1.39 9.96 36.00 0.36 -1.03 16 22 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 23 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 24 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.08 1.46 7.76 -51.93 -0.40 1.06 16 26 H 0.09 1.52 7.23 -51.92 -0.38 1.15 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.04 0.96 6.03 -51.93 -0.31 0.65 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.21 4.40 5.55 -52.49 -0.29 4.11 16 31 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.09 1.54 6.20 -51.93 -0.32 1.21 16 33 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -26.82 298.81 -6.90 -33.71 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.77 Total: 3.58 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.83 Total: -2.40 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.69 Total: -43.04 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.55 Total: 1.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.82 -6.90 -33.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293908515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.344 kcal (2) G-P(sol) polarization free energy of solvation -26.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds