Wall clock time and date at job start Mon Mar 30 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76205 * 102.99823 * 2 1 4 4 C 1.39181 * 119.64665 * 179.97438 * 3 2 1 5 5 C 1.39472 * 118.92145 * 180.02562 * 4 3 2 6 6 C 1.48164 * 120.87680 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99985 * 19.69004 * 6 5 4 8 8 N 1.34771 * 120.00062 * 199.69073 * 6 5 4 9 9 C 1.46502 * 120.00029 * 7.05614 * 8 6 5 10 10 C 1.46502 * 120.00343 * 187.05367 * 8 6 5 11 11 C 1.50699 * 109.47080 * 270.00387 * 10 8 6 12 12 H 1.07998 * 120.00110 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99794 * 179.97438 * 11 10 8 14 14 N 1.31511 * 120.00201 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47113 * 59.99854 * 15 13 11 17 17 H 1.48499 * 109.47350 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47130 * 300.00135 * 15 13 11 19 19 C 1.40044 * 118.24542 * 0.25278 * 5 4 3 20 20 C 1.37950 * 119.18646 * 359.49824 * 19 5 4 21 21 N 1.31909 * 121.00502 * 0.51641 * 20 19 5 22 22 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47257 * 299.99714 * 1 2 3 24 24 H 1.08995 * 109.46970 * 60.00364 * 1 2 3 25 25 H 1.07995 * 120.54203 * 0.02562 * 4 3 2 26 26 H 1.09007 * 109.47099 * 264.72633 * 9 8 6 27 27 H 1.09000 * 109.47296 * 24.72812 * 9 8 6 28 28 H 1.08998 * 109.47278 * 144.72739 * 9 8 6 29 29 H 1.08997 * 109.47414 * 149.99832 * 10 8 6 30 30 H 1.09007 * 109.46508 * 29.99991 * 10 8 6 31 31 H 0.97004 * 120.00415 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.40572 * 179.74863 * 19 5 4 33 33 H 1.08002 * 119.49480 * 180.27130 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5438 2.1157 0.0005 5 6 3.8403 3.4785 0.0011 6 6 5.2445 3.9512 0.0022 7 8 6.1367 3.2060 -0.3518 8 7 5.5323 5.2075 0.3960 9 6 4.4826 6.0545 0.9680 10 6 6.8948 5.7264 0.2521 11 6 7.6820 5.4240 1.5010 12 1 7.2141 4.8983 2.3202 13 6 8.9996 5.8185 1.5979 14 7 9.5695 6.4582 0.6001 15 14 9.9752 5.4443 3.1463 16 1 10.0240 3.9751 3.3576 17 1 11.3566 5.9690 2.9999 18 1 9.3206 6.0905 4.3120 19 6 2.7757 4.3884 0.0065 20 6 1.4818 3.9099 0.0005 21 7 1.2366 2.6138 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 4.3361 1.3818 0.0005 26 1 4.0541 6.6806 0.1853 27 1 3.7029 5.4260 1.3983 28 1 4.9099 6.6870 1.7461 29 1 6.8585 6.8047 0.0976 30 1 7.3754 5.2526 -0.6040 31 1 10.4966 6.7354 0.6681 32 1 2.9653 5.4516 0.0112 33 1 0.6571 4.6072 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299059013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:35 Heat of formation + Delta-G solvation = 22.059852 kcal Electronic energy + Delta-G solvation = -17425.557949 eV Core-core repulsion = 14578.616200 eV Total energy + Delta-G solvation = -2846.941749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48426 -38.51957 -35.18675 -33.17024 -32.21787 -31.34533 -29.09495 -27.91842 -26.51428 -24.47750 -23.60553 -22.46753 -19.73839 -17.71313 -16.76734 -16.62080 -16.15069 -15.69969 -15.15575 -14.74563 -14.70060 -14.32160 -14.11213 -13.83718 -13.41672 -13.13501 -12.67653 -12.59669 -12.23166 -12.15844 -11.38740 -11.16625 -10.96900 -10.64868 -10.62965 -10.21809 -9.97426 -9.90145 -9.77851 -9.66609 -9.09215 -8.47442 -7.81219 -7.66382 -6.08725 -4.13765 0.77582 0.97202 1.32516 2.12116 3.20198 3.30564 3.35027 3.38491 3.66722 3.92372 4.40807 4.45656 4.69314 4.92364 4.96525 5.01555 5.02587 5.12879 5.25923 5.52040 5.57820 5.63943 5.69756 5.71979 6.08061 6.10428 6.42737 6.93439 7.31420 7.39653 7.59731 7.86529 8.15612 8.21344 8.76781 8.93045 9.51324 10.99483 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.004320 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.670180 B = 6480.670141 C = 6912.544111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.077 6.077 3 C 0.111 3.889 4 C -0.096 4.096 5 C -0.057 4.057 6 C 0.542 3.458 7 O -0.523 6.523 8 N -0.589 5.589 9 C 0.066 3.934 10 C 0.246 3.754 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.170 4.170 20 C 0.104 3.896 21 N -0.485 5.485 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.166 0.834 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -5.381 -0.695 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.161 5.839 3 C -0.138 4.138 4 C -0.122 4.122 5 C -0.070 4.070 6 C 0.327 3.673 7 O -0.400 6.400 8 N -0.320 5.320 9 C -0.078 4.078 10 C 0.128 3.872 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.193 4.193 20 C -0.055 4.055 21 N -0.198 5.198 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.167 0.833 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.183 0.817 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.537 -6.992 -0.942 19.834 hybrid contribution 0.579 1.374 0.886 1.735 sum -17.957 -5.617 -0.056 18.815 Atomic orbital electron populations 1.23430 0.93965 1.05902 1.06599 1.85635 1.07430 0.98942 1.91881 1.22881 0.91714 0.98346 1.00833 1.21787 0.95885 0.96076 0.98454 1.20631 0.95122 0.93589 0.97628 1.18056 0.86732 0.82702 0.79766 1.90777 1.47247 1.53792 1.48165 1.48070 1.12749 1.12027 1.59196 1.22314 0.91672 0.95335 0.98443 1.19377 0.75107 0.94419 0.98338 1.21365 0.96499 1.37448 1.01459 0.92395 1.24929 0.97380 0.94910 0.96788 1.69914 1.13299 1.38967 1.31183 0.86534 0.78910 0.78893 0.82962 1.20095 1.21113 1.20212 1.23288 0.92981 1.02900 1.00083 1.22654 0.96043 0.91258 0.95596 1.67816 1.35057 1.03058 1.13915 0.88033 0.89532 0.89543 0.83269 0.92783 0.90815 0.90559 0.94522 0.93725 0.92563 0.81703 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 10.01 101.05 1.01 -0.10 16 2 S -0.08 -0.92 22.55 -107.50 -2.42 -3.34 16 3 C 0.11 1.58 7.00 -16.96 -0.12 1.46 16 4 C -0.10 -1.54 9.41 -38.77 -0.36 -1.90 16 5 C -0.06 -0.95 5.60 -104.68 -0.59 -1.54 16 6 C 0.54 11.54 7.55 -12.19 -0.09 11.44 16 7 O -0.52 -13.37 16.26 5.35 0.09 -13.28 16 8 N -0.59 -12.31 2.86 -183.95 -0.53 -12.84 16 9 C 0.07 0.98 8.67 59.85 0.52 1.50 16 10 C 0.25 6.33 5.13 -5.19 -0.03 6.30 16 11 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 15 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.17 -2.18 7.70 -39.01 -0.30 -2.48 16 20 C 0.10 1.19 11.16 -17.62 -0.20 1.00 16 21 N -0.48 -6.41 9.40 -12.16 -0.11 -6.53 16 22 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.15 2.47 7.86 -52.49 -0.41 2.06 16 26 H 0.05 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.07 0.95 5.07 -51.93 -0.26 0.68 16 28 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.04 1.29 7.53 -51.92 -0.39 0.90 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.17 1.77 4.14 -52.49 -0.22 1.56 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -33.25 298.84 -7.07 -40.32 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.73 Total: -2.11 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.58 Total: 2.11 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.10 Total: -44.96 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.42 Total: -3.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.25 -7.07 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299059013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.377 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds