Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.55659 * 2 1 4 4 C 1.53135 * 109.55872 * 120.21627 * 2 1 3 5 5 C 1.52973 * 109.44482 * 190.61947 * 4 2 1 6 6 C 1.52330 * 108.76198 * 308.46559 * 5 4 2 7 7 N 1.32179 * 123.46969 * 197.71112 * 6 5 4 8 8 C 1.29880 * 117.98380 * 179.97438 * 7 6 5 9 9 N 1.37922 * 125.46054 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99714 * 0.03331 * 9 8 7 11 11 O 1.21859 * 120.00405 * 359.97438 * 10 9 8 12 12 C 1.41238 * 120.00173 * 179.97438 * 10 9 8 13 13 H 1.08001 * 119.99489 * 6.21709 * 12 10 9 14 14 C 1.40159 * 120.00241 * 185.94380 * 12 10 9 15 15 N 1.30614 * 120.00051 * 354.03805 * 14 12 10 16 16 Si 1.86795 * 119.99860 * 174.03091 * 14 12 10 17 17 H 1.48508 * 109.46923 * 94.98580 * 16 14 12 18 18 H 1.48500 * 109.47639 * 214.98543 * 16 14 12 19 19 H 1.48504 * 109.47501 * 334.99292 * 16 14 12 20 20 S 1.76067 * 109.08282 * 0.28547 * 8 7 6 21 21 C 1.35323 * 122.37136 * 17.67256 * 6 5 4 22 22 C 1.51086 * 125.19294 * 0.07413 * 21 6 5 23 23 H 1.08998 * 109.46834 * 299.78332 * 1 2 3 24 24 H 1.08997 * 109.47715 * 59.78927 * 1 2 3 25 25 H 1.09007 * 109.46891 * 179.78996 * 1 2 3 26 26 H 1.09000 * 109.47690 * 70.62718 * 4 2 1 27 27 H 1.08995 * 109.47926 * 310.61513 * 4 2 1 28 28 H 1.09003 * 109.59371 * 188.68143 * 5 4 2 29 29 H 1.09007 * 109.59004 * 68.24566 * 5 4 2 30 30 H 0.96997 * 120.00038 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00382 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.60768 * 256.25273 * 22 21 6 33 33 H 1.09004 * 109.60917 * 135.73555 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0427 -0.7262 1.2469 5 6 3.5491 -0.4991 1.3852 6 6 4.2211 -0.8523 0.0646 7 7 5.5159 -1.0905 -0.0537 8 6 5.9766 -1.3829 -1.2323 9 7 7.2947 -1.6584 -1.5305 10 6 8.2248 -1.6371 -0.5554 11 8 7.9013 -1.3739 0.5896 12 6 9.5745 -1.9197 -0.8606 13 1 9.8791 -2.0539 -1.8880 14 6 10.5197 -2.0204 0.1695 15 7 10.1787 -1.7390 1.3985 16 14 12.2669 -2.5573 -0.2154 17 1 13.1230 -1.3585 -0.4036 18 1 12.7943 -3.3704 0.9097 19 1 12.2727 -3.3696 -1.4586 20 16 4.6500 -1.3640 -2.3898 21 6 3.5319 -0.9493 -1.0959 22 6 2.0450 -0.7273 -1.2467 23 1 -0.3633 0.5105 0.8919 24 1 -0.3634 0.5171 -0.8880 25 1 -0.3633 -1.0277 -0.0038 26 1 1.8431 -1.7937 1.1536 27 1 1.5340 -0.3372 2.1290 28 1 3.9435 -1.1354 2.1775 29 1 3.7406 0.5470 1.6244 30 1 7.5522 -1.8676 -2.4420 31 1 10.8329 -1.8083 2.1114 32 1 1.5398 -1.6882 -1.3447 33 1 1.8538 -0.1187 -2.1306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335003179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -32.140321 kcal Electronic energy + Delta-G solvation = -17561.023819 eV Core-core repulsion = 14711.731774 eV Total energy + Delta-G solvation = -2849.292045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07740 -39.73023 -37.62389 -35.35420 -34.48876 -32.14342 -31.16467 -29.15699 -26.73463 -25.07195 -24.13804 -22.51688 -21.15949 -20.35944 -19.12514 -18.33017 -17.40065 -17.31013 -16.25481 -15.88078 -15.64449 -15.18916 -15.01349 -14.64977 -14.50940 -13.99879 -13.92258 -13.29962 -13.27105 -13.00130 -12.80056 -12.73857 -12.63665 -12.36391 -12.02370 -11.69345 -11.45857 -11.23154 -11.17149 -10.86790 -10.51657 -10.04772 -9.65479 -8.67309 -8.42163 -7.07821 -0.06113 0.12457 0.83518 1.39319 1.40160 1.58239 1.98255 2.19029 2.44900 2.61000 3.59103 3.62286 3.85231 3.89778 3.98975 4.25264 4.50434 4.56066 4.63428 4.76891 4.84050 4.89715 4.98408 5.08885 5.17798 5.20398 5.23828 5.42068 5.45174 5.56262 5.68574 5.87247 6.02498 6.67577 6.91810 7.42641 8.34065 8.52158 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.044542 B = 0.004538 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.466155 B = 6169.145617 C = 6741.284012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.102 4.102 5 C -0.041 4.041 6 C 0.070 3.930 7 N -0.541 5.541 8 C 0.311 3.689 9 N -0.641 5.641 10 C 0.518 3.482 11 O -0.575 6.575 12 C -0.559 4.559 13 H 0.098 0.902 14 C 0.030 3.970 15 N -0.800 5.800 16 Si 1.008 2.992 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.244 1.244 20 S 0.063 5.937 21 C -0.255 4.255 22 C -0.021 4.021 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.419 0.581 31 H 0.281 0.719 32 H 0.088 0.912 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 1.120 -6.822 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.140 4.140 5 C -0.081 4.081 6 C -0.061 4.061 7 N -0.264 5.264 8 C -0.059 4.059 9 N -0.293 5.293 10 C 0.325 3.675 11 O -0.457 6.457 12 C -0.594 4.594 13 H 0.116 0.884 14 C -0.189 4.189 15 N -0.428 5.428 16 Si 0.826 3.174 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.166 1.166 20 S 0.314 5.686 21 C -0.378 4.378 22 C -0.061 4.061 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.257 0.743 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.816 1.134 -6.514 16.224 hybrid contribution 1.051 -0.120 0.421 1.138 sum -13.765 1.013 -6.093 15.088 Atomic orbital electron populations 1.21762 0.92264 1.02675 1.02791 1.21189 0.97137 0.99087 0.93075 0.91271 1.21604 0.91689 1.01339 0.99366 1.20479 0.95817 1.01409 0.90351 1.21387 0.86348 1.00746 0.97642 1.66142 1.15212 1.22221 1.22828 1.24753 0.91547 0.98744 0.90887 1.43675 1.02206 1.69538 1.13846 1.17641 0.86321 0.79570 0.83976 1.90754 1.81296 1.52452 1.21159 1.20459 0.91667 1.50741 0.96551 0.88384 1.27119 1.06102 0.92048 0.93588 1.70181 1.37358 1.33072 1.02191 0.84859 0.73908 0.79120 0.79535 1.18435 1.19631 1.16638 1.84084 0.99766 1.72138 1.12598 1.26101 1.01840 1.16517 0.93309 1.20269 0.84536 1.01679 0.99588 0.91440 0.91605 0.91900 0.91580 0.88719 0.91972 0.90510 0.74342 0.90905 0.89348 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 2 C -0.08 -1.64 2.73 -10.66 -0.03 -1.67 16 3 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 4 C -0.10 -2.28 5.17 30.63 0.16 -2.12 16 5 C -0.04 -1.34 6.29 30.36 0.19 -1.15 16 6 C 0.07 2.83 6.75 42.36 0.29 3.12 16 7 N -0.54 -27.85 8.61 -183.24 -1.58 -29.43 16 8 C 0.31 14.57 8.25 179.50 1.48 16.05 16 9 N -0.64 -31.13 5.35 -318.73 -1.71 -32.83 16 10 C 0.52 30.94 7.50 84.98 0.64 31.57 16 11 O -0.57 -39.94 13.53 -4.86 -0.07 -40.00 16 12 C -0.56 -31.08 9.28 23.47 0.22 -30.86 16 13 H 0.10 4.72 7.86 -2.91 -0.02 4.70 16 14 C 0.03 1.63 5.49 85.34 0.47 2.10 16 15 N -0.80 -48.44 11.74 21.85 0.26 -48.19 16 16 Si 1.01 39.40 29.56 68.60 2.03 41.43 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 19 H -0.24 -8.71 7.11 99.48 0.71 -8.01 16 20 S 0.06 2.11 23.43 -56.49 -1.32 0.79 16 21 C -0.26 -8.43 6.39 25.13 0.16 -8.27 16 22 C -0.02 -0.46 5.58 30.05 0.17 -0.30 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 27 H 0.09 1.65 8.11 -2.39 -0.02 1.63 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.42 16.49 8.77 -92.71 -0.81 15.68 16 31 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 32 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.17 292.37 2.33 -77.83 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.32 Total: 23.05 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.40 Total: 7.35 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.03 Total: -110.45 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.07 Total: -40.00 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.79 kcal Total: -80.17 2.33 -77.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335003179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.690 kcal (2) G-P(sol) polarization free energy of solvation -80.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds