Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99977 * 2 1 4 4 N 1.34776 * 119.99912 * 179.97438 * 2 1 3 5 5 C 1.40068 * 119.99992 * 185.53217 * 4 2 1 6 6 C 1.38452 * 120.00468 * 24.82981 * 5 4 2 7 7 C 1.39645 * 119.80124 * 179.79837 * 6 5 4 8 8 C 1.47618 * 120.09785 * 180.22539 * 7 6 5 9 9 O 1.21603 * 119.99653 * 0.24950 * 8 7 6 10 10 N 1.34773 * 119.99885 * 180.25211 * 8 7 6 11 11 C 1.36889 * 119.99937 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99624 * 359.97438 * 11 10 8 13 13 C 1.39037 * 120.00409 * 179.97438 * 11 10 8 14 14 N 1.31378 * 119.99512 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00333 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47297 * 89.99917 * 15 13 11 17 17 H 1.48498 * 109.46959 * 210.00167 * 15 13 11 18 18 H 1.48502 * 109.47096 * 330.00034 * 15 13 11 19 19 C 1.39732 * 119.80274 * 0.47701 * 7 6 5 20 20 C 1.37878 * 120.01096 * 359.76867 * 19 7 6 21 21 C 1.38518 * 120.20088 * 359.97438 * 20 19 7 22 22 F 1.35100 * 119.90209 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47071 * 300.00151 * 1 2 3 25 25 H 1.09003 * 109.46620 * 60.00349 * 1 2 3 26 26 H 0.97000 * 119.99832 * 5.80890 * 4 2 1 27 27 H 1.07996 * 120.09732 * 0.02562 * 6 5 4 28 28 H 0.97000 * 120.00252 * 359.97438 * 10 8 7 29 29 H 0.96998 * 119.99340 * 179.97438 * 14 13 11 30 30 H 1.08005 * 119.99254 * 179.75642 * 19 7 6 31 31 H 1.08000 * 119.90322 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1700 0.1175 6 6 4.2224 -0.1085 0.7284 7 6 5.6138 -0.1177 0.8464 8 6 6.3086 1.0083 1.5010 9 8 5.6689 1.9435 1.9425 10 7 7.6520 0.9998 1.6094 11 6 8.2963 2.0437 2.2169 12 1 7.7280 2.8743 2.6090 13 6 9.6821 2.0348 2.3292 14 7 10.3732 1.0246 1.8518 15 14 10.5612 3.4590 3.1588 16 1 10.6900 3.1822 4.6121 17 1 11.9122 3.6207 2.5640 18 1 9.7802 4.7063 2.9598 19 6 6.3469 -1.1934 0.3384 20 6 5.6961 -2.2439 -0.2730 21 6 4.3155 -2.2377 -0.3855 22 9 3.6840 -3.2704 -0.9853 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6996 -2.0051 -0.0841 27 1 3.6514 0.7223 1.1157 28 1 8.1623 0.2537 1.2576 29 1 11.3400 1.0186 1.9298 30 1 7.4234 -1.2017 0.4246 31 1 6.2644 -3.0742 -0.6654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339927000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = -114.741562 kcal Electronic energy + Delta-G solvation = -19325.234394 eV Core-core repulsion = 15906.147315 eV Total energy + Delta-G solvation = -3419.087079 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.02101 -41.65953 -40.48804 -38.82264 -36.16561 -36.00940 -33.49190 -32.05374 -31.65458 -29.53996 -27.27273 -24.66285 -24.27325 -21.74881 -21.44240 -20.32374 -19.15518 -18.50644 -18.11805 -17.54704 -16.97749 -16.79700 -16.48644 -16.23770 -15.83122 -15.54627 -15.30449 -14.93912 -14.67616 -14.23796 -13.78038 -13.61814 -13.53358 -13.39926 -13.07049 -12.94565 -12.68876 -12.42190 -12.12867 -11.79322 -11.60501 -10.94003 -10.60149 -10.16534 -9.91426 -9.26824 -8.58808 -6.03012 -0.36327 0.08649 1.34538 1.41147 1.46680 1.54484 1.88416 1.96217 2.25511 2.67969 2.97986 2.99593 3.24013 3.62102 3.76755 4.03275 4.07758 4.14938 4.42691 4.48967 4.63114 4.75909 4.91234 5.05025 5.05835 5.19347 5.32172 5.34634 5.76675 5.90330 6.28956 6.46838 6.99151 7.02867 7.38088 7.96322 8.58266 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028185 B = 0.004769 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.214053 B = 5869.929312 C = 6812.854055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.497 3.503 3 O -0.573 6.573 4 N -0.656 5.656 5 C 0.110 3.890 6 C -0.082 4.082 7 C -0.109 4.109 8 C 0.459 3.541 9 O -0.639 6.639 10 N -0.544 5.544 11 C -0.339 4.339 12 H 0.082 0.918 13 C -0.005 4.005 14 N -0.905 5.905 15 Si 0.999 3.001 16 H -0.267 1.267 17 H -0.264 1.264 18 H -0.274 1.274 19 C -0.089 4.089 20 C -0.115 4.115 21 C 0.082 3.918 22 F -0.125 7.125 23 H 0.116 0.884 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.432 0.568 27 H 0.132 0.868 28 H 0.401 0.599 29 H 0.285 0.715 30 H 0.146 0.854 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -12.164 -5.777 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.288 3.712 3 O -0.451 6.451 4 N -0.304 5.304 5 C 0.014 3.986 6 C -0.104 4.104 7 C -0.114 4.114 8 C 0.249 3.751 9 O -0.528 6.528 10 N -0.179 5.179 11 C -0.468 4.468 12 H 0.100 0.900 13 C -0.207 4.207 14 N -0.544 5.544 15 Si 0.822 3.178 16 H -0.192 1.192 17 H -0.189 1.189 18 H -0.199 1.199 19 C -0.109 4.109 20 C -0.134 4.134 21 C 0.060 3.940 22 F -0.103 7.103 23 H 0.135 0.865 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.273 0.727 27 H 0.149 0.851 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.733 -10.883 -5.504 18.366 hybrid contribution 0.551 0.040 0.179 0.581 sum -13.181 -10.843 -5.325 17.879 Atomic orbital electron populations 1.21908 0.85548 1.07307 1.06624 1.22229 0.93204 0.82091 0.73668 1.90810 1.71655 1.33348 1.49277 1.43581 1.03433 1.11374 1.72000 1.17578 0.84990 0.95464 1.00570 1.21121 0.93409 0.98519 0.97372 1.20006 0.94086 0.95722 1.01538 1.18360 0.82749 0.88181 0.85821 1.90572 1.66678 1.39494 1.56102 1.41844 1.04996 1.20976 1.50073 1.19802 0.90720 1.00757 1.35570 0.90048 1.26172 0.96236 1.00993 0.97288 1.69630 1.08886 1.31522 1.44380 0.84841 0.77400 0.77159 0.78421 1.19167 1.18874 1.19861 1.21335 1.00893 0.91959 0.96677 1.21170 0.91513 1.00378 1.00307 1.17385 0.90763 0.86185 0.99701 1.91491 1.82189 1.55670 1.80976 0.86503 0.87494 0.87116 0.72729 0.85052 0.76326 0.90549 0.83658 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.39 71.24 0.74 -1.11 16 2 C 0.50 12.61 7.74 87.66 0.68 13.29 16 3 O -0.57 -22.17 14.26 -3.04 -0.04 -22.22 16 4 N -0.66 -14.95 5.31 -303.43 -1.61 -16.56 16 5 C 0.11 3.38 6.43 38.12 0.25 3.63 16 6 C -0.08 -3.37 8.26 22.66 0.19 -3.18 16 7 C -0.11 -4.71 5.87 -20.10 -0.12 -4.83 16 8 C 0.46 24.97 7.72 86.72 0.67 25.64 16 9 O -0.64 -40.23 15.91 -4.04 -0.06 -40.29 16 10 N -0.54 -29.59 5.23 -309.82 -1.62 -31.21 16 11 C -0.34 -19.81 9.68 84.10 0.81 -19.00 16 12 H 0.08 5.09 7.15 -2.91 -0.02 5.07 16 13 C 0.00 -0.26 5.50 84.95 0.47 0.20 16 14 N -0.91 -47.78 13.05 21.68 0.28 -47.50 16 15 Si 1.00 42.54 29.55 68.60 2.03 44.56 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.09 -2.95 9.53 22.55 0.21 -2.74 16 20 C -0.11 -2.93 10.00 22.25 0.22 -2.70 16 21 C 0.08 2.13 7.31 22.58 0.17 2.30 16 22 F -0.12 -2.65 16.80 44.97 0.76 -1.90 16 23 H 0.12 0.48 7.92 -2.39 -0.02 0.46 16 24 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.43 5.89 8.29 -92.71 -0.77 5.12 16 27 H 0.13 6.30 5.37 -2.91 -0.02 6.28 16 28 H 0.40 19.99 5.92 -92.71 -0.55 19.44 16 29 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.15 4.63 6.39 -2.91 -0.02 4.61 16 31 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -79.18 283.58 3.91 -75.27 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.10 Total: 28.34 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 4.29 Total: 11.49 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -2.95 Total: -95.26 kcal Atomic # 8 Polarization: -62.40 SS G_CDS: -0.11 Total: -62.51 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.76 Total: -1.90 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.18 3.91 -75.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339927000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.472 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds