Wall clock time and date at job start Mon Mar 30 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21293 * 119.99987 * 2 1 4 4 N 1.34778 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.40057 * 120.00239 * 184.60746 * 4 2 1 6 6 C 1.39052 * 119.95874 * 324.87318 * 5 4 2 7 7 C 1.38135 * 120.28186 * 179.97438 * 6 5 4 8 8 C 1.38310 * 120.19927 * 0.03969 * 7 6 5 9 9 F 1.35101 * 120.04390 * 180.25226 * 8 7 6 10 10 C 1.39888 * 119.91819 * 359.97438 * 8 7 6 11 11 C 1.47590 * 120.14397 * 180.02562 * 10 8 7 12 12 O 1.21605 * 119.99615 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00299 * 180.02562 * 11 10 8 14 14 C 1.36895 * 120.00025 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99674 * 359.97438 * 14 13 11 16 16 C 1.39032 * 119.99756 * 180.02562 * 14 13 11 17 17 N 1.31371 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99850 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46925 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47140 * 119.99584 * 18 16 14 21 21 H 1.48502 * 109.47168 * 239.99804 * 18 16 14 22 22 C 1.38460 * 119.95699 * 144.89726 * 5 4 2 23 23 H 1.09003 * 109.47273 * 239.99647 * 1 2 3 24 24 H 1.09003 * 109.47247 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47648 * 119.99909 * 1 2 3 26 26 H 0.97001 * 119.99882 * 4.61270 * 4 2 1 27 27 H 1.07995 * 119.86245 * 0.02562 * 6 5 4 28 28 H 1.07994 * 119.90451 * 180.02562 * 7 6 5 29 29 H 0.97000 * 120.00139 * 359.97438 * 13 11 10 30 30 H 0.97005 * 119.99459 * 180.02562 * 17 16 14 31 31 H 1.08003 * 120.10634 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5780 -1.1692 0.0969 6 6 4.3176 -0.1575 -0.5057 7 6 5.6958 -0.1526 -0.4134 8 6 6.3503 -1.1553 0.2790 9 9 7.6981 -1.1446 0.3716 10 6 5.6146 -2.1773 0.8882 11 6 6.3078 -3.2494 1.6287 12 8 7.5211 -3.2457 1.7099 13 7 5.5962 -4.2329 2.2141 14 6 6.2392 -5.2275 2.9005 15 1 7.3168 -5.2243 2.9726 16 6 5.5051 -6.2424 3.5039 17 7 4.1944 -6.2465 3.4158 18 14 6.3825 -7.5993 4.4412 19 1 7.8484 -7.3662 4.3929 20 1 5.9271 -7.5989 5.8546 21 1 6.0698 -8.9117 3.8206 22 6 4.2212 -2.1788 0.7927 23 1 -0.3634 -0.5139 0.8900 24 1 -0.3634 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8899 26 1 1.6983 -2.0058 -0.0685 27 1 3.8123 0.6282 -1.0475 28 1 6.2642 0.6363 -0.8834 29 1 4.6284 -4.2360 2.1491 30 1 3.6823 -6.9545 3.8372 31 1 3.6472 -2.9652 1.2602 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343023855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:47 Heat of formation + Delta-G solvation = -115.748540 kcal Electronic energy + Delta-G solvation = -19365.959057 eV Core-core repulsion = 15946.828312 eV Total energy + Delta-G solvation = -3419.130745 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79194 -41.59263 -40.39874 -38.87177 -36.18067 -35.67440 -33.64090 -32.20283 -31.61322 -29.17578 -27.34756 -25.04715 -23.58171 -22.33863 -21.04874 -20.28388 -18.77114 -18.48020 -18.35604 -17.30201 -17.01847 -16.66987 -16.55660 -16.14014 -15.66756 -15.46328 -15.35626 -14.92802 -14.47208 -14.25490 -14.00074 -13.60960 -13.55156 -13.25365 -13.00174 -12.92381 -12.64763 -12.34737 -12.13037 -11.64672 -11.33403 -11.03132 -10.52870 -10.23788 -10.10406 -9.16461 -8.60118 -6.03731 -0.29244 0.00981 1.35692 1.41505 1.50745 1.55727 1.94233 2.08462 2.24572 2.64085 2.94635 3.20751 3.25578 3.62988 3.81262 3.85647 4.13988 4.29036 4.38576 4.60461 4.68225 4.71843 5.00433 5.06696 5.08447 5.16576 5.29297 5.32812 5.78921 5.88570 6.41496 6.44752 6.98185 7.10253 7.35395 7.93970 8.57200 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.005449 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.140360 B = 5137.589662 C = 6472.656886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.135 3.865 6 C -0.081 4.081 7 C -0.130 4.130 8 C 0.102 3.898 9 F -0.139 7.139 10 C -0.141 4.141 11 C 0.459 3.541 12 O -0.629 6.629 13 N -0.543 5.543 14 C -0.337 4.337 15 H 0.082 0.918 16 C -0.004 4.004 17 N -0.905 5.905 18 Si 0.998 3.002 19 H -0.275 1.275 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.092 4.092 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.431 0.569 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.400 0.600 30 H 0.285 0.715 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.992 8.250 -7.948 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.298 3.702 3 O -0.452 6.452 4 N -0.308 5.308 5 C 0.040 3.960 6 C -0.101 4.101 7 C -0.149 4.149 8 C 0.081 3.919 9 F -0.118 7.118 10 C -0.145 4.145 11 C 0.248 3.752 12 O -0.518 6.518 13 N -0.178 5.178 14 C -0.467 4.467 15 H 0.100 0.900 16 C -0.206 4.206 17 N -0.544 5.544 18 Si 0.821 3.179 19 H -0.200 1.200 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.114 4.114 23 H 0.130 0.870 24 H 0.115 0.885 25 H 0.138 0.862 26 H 0.271 0.729 27 H 0.178 0.822 28 H 0.186 0.814 29 H 0.236 0.764 30 H 0.095 0.905 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.991 8.825 -7.779 16.798 hybrid contribution 0.334 -1.156 0.577 1.334 sum -11.657 7.669 -7.202 15.703 Atomic orbital electron populations 1.21964 0.86415 1.06777 1.06981 1.21959 0.92753 0.82073 0.73416 1.90708 1.71713 1.32796 1.50013 1.43611 1.03374 1.11404 1.72382 1.17589 0.84589 0.96215 0.97633 1.21354 0.92171 0.98685 0.97897 1.21210 0.95114 0.98182 1.00408 1.18056 0.77048 0.96487 1.00340 1.91496 1.29704 1.96178 1.94375 1.19995 0.94590 0.96945 1.03009 1.18189 0.87136 0.84609 0.85260 1.90619 1.15178 1.79108 1.66901 1.41805 1.09624 1.21281 1.45100 1.19827 0.93582 1.03108 1.30146 0.90048 1.26134 0.96318 1.00347 0.97769 1.69618 1.05887 1.35167 1.43686 0.84799 0.78028 0.77125 0.77956 1.19973 1.19125 1.18978 1.21001 0.91665 1.00288 0.98415 0.86957 0.88512 0.86170 0.72920 0.82203 0.81370 0.76436 0.90542 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.32 71.23 0.74 -0.58 16 2 C 0.51 9.54 7.78 87.65 0.68 10.22 16 3 O -0.57 -15.89 14.52 -3.07 -0.04 -15.94 16 4 N -0.66 -12.31 5.34 -303.57 -1.62 -13.93 16 5 C 0.13 3.65 6.29 38.07 0.24 3.89 16 6 C -0.08 -2.21 8.69 22.44 0.19 -2.02 16 7 C -0.13 -3.87 10.01 22.26 0.22 -3.65 16 8 C 0.10 4.03 7.28 22.69 0.17 4.19 16 9 F -0.14 -6.27 15.54 44.97 0.70 -5.57 16 10 C -0.14 -5.91 5.88 -20.06 -0.12 -6.03 16 11 C 0.46 24.34 7.72 86.71 0.67 25.01 16 12 O -0.63 -38.64 14.90 -4.05 -0.06 -38.70 16 13 N -0.54 -28.71 5.23 -309.85 -1.62 -30.33 16 14 C -0.34 -19.25 9.68 84.09 0.81 -18.44 16 15 H 0.08 5.00 7.15 -2.91 -0.02 4.98 16 16 C 0.00 -0.19 5.50 84.95 0.47 0.28 16 17 N -0.90 -46.21 13.05 21.68 0.28 -45.92 16 18 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 C -0.09 -3.02 9.45 22.67 0.21 -2.80 16 23 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 25 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.43 5.05 8.82 -92.71 -0.82 4.24 16 27 H 0.16 4.06 6.21 -2.91 -0.02 4.04 16 28 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 29 H 0.40 19.27 5.92 -92.71 -0.55 18.72 16 30 H 0.28 13.35 8.31 -92.70 -0.77 12.58 16 31 H 0.15 4.50 6.40 -2.91 -0.02 4.48 16 Total: -1.00 -76.52 283.33 3.79 -72.73 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.16 Total: 24.02 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 4.29 Total: 10.07 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -2.96 Total: -90.19 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.10 Total: -54.63 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.70 Total: -5.57 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -76.52 3.79 -72.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343023855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.022 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds