Wall clock time and date at job start Mon Mar 30 2020 00:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38401 * 120.44577 * 2 1 4 4 C 1.38799 * 118.49413 * 180.02562 * 3 2 1 5 5 C 1.38111 * 119.30901 * 0.02562 * 4 3 2 6 6 N 1.31902 * 120.84742 * 359.71628 * 5 4 3 7 7 C 1.32378 * 121.63668 * 0.57244 * 6 5 4 8 8 N 1.39413 * 119.69777 * 179.71202 * 7 6 5 9 9 C 1.46494 * 120.00393 * 95.00456 * 8 7 6 10 10 C 1.34775 * 119.99560 * 275.00507 * 8 7 6 11 11 O 1.21279 * 120.00095 * 0.02562 * 10 8 7 12 12 C 1.50703 * 119.99922 * 179.97438 * 10 8 7 13 13 S 1.81001 * 109.46935 * 180.02562 * 12 10 8 14 14 C 1.76207 * 99.99763 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00016 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47324 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47059 * 120.00600 * 18 16 14 21 21 H 1.48508 * 109.47327 * 240.00377 * 18 16 14 22 22 H 1.08991 * 109.47594 * 272.02338 * 1 2 3 23 23 H 1.09000 * 109.47276 * 32.03081 * 1 2 3 24 24 H 1.09004 * 109.46861 * 152.02221 * 1 2 3 25 25 H 1.08006 * 120.75268 * 0.04448 * 3 2 1 26 26 H 1.08007 * 120.34323 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.57425 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47569 * 264.81288 * 9 8 7 29 29 H 1.09004 * 109.47171 * 24.81291 * 9 8 7 30 30 H 1.08998 * 109.47319 * 144.80989 * 9 8 7 31 31 H 1.09000 * 109.46999 * 300.00103 * 12 10 8 32 32 H 1.09001 * 109.46707 * 59.99816 * 12 10 8 33 33 H 0.97009 * 119.99524 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1932 0.0000 4 6 3.5955 1.1459 -0.0005 5 6 4.2301 -0.0807 -0.0016 6 7 3.5352 -1.2018 0.0035 7 6 2.2114 -1.1982 -0.0015 8 7 1.5174 -2.4073 -0.0018 9 6 1.0521 -2.9852 1.2613 10 6 1.2747 -3.0445 -1.1643 11 8 1.6604 -2.5663 -2.2100 12 6 0.5250 -4.3518 -1.1648 13 16 0.3607 -4.9525 -2.8643 14 6 -0.5276 -6.4467 -2.5761 15 1 -0.7972 -6.7291 -1.5691 16 6 -0.8819 -7.2603 -3.6434 17 7 -0.5538 -6.9159 -4.8707 18 14 -1.8230 -8.8447 -3.3378 19 1 -2.0676 -9.0022 -1.8816 20 1 -3.1224 -8.7948 -4.0550 21 1 -1.0277 -9.9965 -3.8340 22 1 -0.3634 0.0363 1.0269 23 1 -0.3634 0.8712 -0.5450 24 1 -0.3633 -0.9076 -0.4821 25 1 1.6879 2.1396 0.0007 26 1 4.1725 2.0589 -0.0010 27 1 5.3094 -0.1225 -0.0025 28 1 1.7842 -3.7079 1.6219 29 1 0.9293 -2.1931 1.9999 30 1 0.0965 -3.4848 1.1021 31 1 1.0724 -5.0847 -0.5721 32 1 -0.4653 -4.2029 -0.7343 33 1 -0.8017 -7.4844 -5.6166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347096490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:30 Heat of formation + Delta-G solvation = 9.758958 kcal Electronic energy + Delta-G solvation = -17417.594142 eV Core-core repulsion = 14570.118987 eV Total energy + Delta-G solvation = -2847.475155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85040 -38.83598 -35.45361 -33.65863 -32.43025 -31.57140 -29.12250 -27.53662 -26.48149 -25.50018 -23.49774 -22.24563 -19.90773 -17.74873 -17.32063 -16.96817 -16.33701 -15.66780 -14.98786 -14.80583 -14.49307 -14.15126 -13.92290 -13.26309 -13.12682 -13.09902 -12.76746 -12.64788 -12.57242 -12.46472 -11.98343 -11.75033 -11.06960 -11.02025 -10.76873 -9.90736 -9.81338 -9.79595 -9.48615 -9.07411 -8.91269 -8.71182 -8.23125 -6.50913 -6.21732 -3.92662 0.92738 1.16824 2.71666 2.98391 3.21899 3.24339 3.30981 3.52569 3.63380 4.19756 4.47538 4.64264 4.85781 4.87022 4.89536 5.02194 5.13533 5.16797 5.33464 5.38404 5.47813 5.52010 5.58217 5.66354 5.85677 5.93898 6.00837 6.08480 6.10895 6.29084 6.90059 7.37351 7.59907 7.91765 8.35333 8.49584 9.23625 10.85783 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041680 B = 0.004206 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.629602 B = 6655.797081 C = 6779.855367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.122 4.122 3 C -0.073 4.073 4 C -0.172 4.172 5 C 0.106 3.894 6 N -0.479 5.479 7 C 0.359 3.641 8 N -0.577 5.577 9 C 0.087 3.913 10 C 0.541 3.459 11 O -0.501 6.501 12 C -0.147 4.147 13 S -0.060 6.060 14 C -0.534 4.534 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.157 0.843 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 14.746 14.559 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.192 4.192 5 C -0.053 4.053 6 N -0.189 5.189 7 C 0.133 3.867 8 N -0.313 5.313 9 C -0.056 4.056 10 C 0.330 3.670 11 O -0.372 6.372 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.175 0.825 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.456 14.564 12.802 19.896 hybrid contribution -1.301 -0.798 1.427 2.089 sum 3.155 13.766 14.229 20.048 Atomic orbital electron populations 1.20699 0.89797 1.03795 1.02324 1.20929 0.97984 0.92892 1.00836 1.21405 0.94082 0.97696 0.96760 1.22150 0.95219 0.99648 1.02182 1.22557 1.00079 0.86929 0.95693 1.67322 1.08156 1.32262 1.11202 1.17962 0.87132 0.85492 0.96150 1.45275 1.56317 1.21427 1.08250 1.21832 1.00519 0.98888 0.84314 1.20478 0.78921 0.85496 0.82135 1.90724 1.49791 1.66039 1.30644 1.23551 1.01907 0.95586 1.08680 1.85462 1.74029 1.26078 0.97784 1.22898 1.41548 1.07722 0.96098 0.90793 1.24993 0.95794 0.98364 0.94414 1.70033 1.44073 1.37667 0.98481 0.86109 0.79207 0.81670 0.78458 1.19579 1.20572 1.20556 0.90885 0.91063 0.90811 0.84519 0.84543 0.82533 0.92028 0.91217 0.89941 0.88834 0.88909 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.81 36.00 0.35 -0.84 16 2 C -0.12 -1.58 5.91 -104.28 -0.62 -2.20 16 3 C -0.07 -0.76 9.86 -39.31 -0.39 -1.15 16 4 C -0.17 -1.69 10.11 -39.42 -0.40 -2.09 16 5 C 0.11 1.28 11.18 -17.57 -0.20 1.08 16 6 N -0.48 -7.73 10.39 -12.37 -0.13 -7.86 16 7 C 0.36 5.67 5.40 -154.69 -0.84 4.84 16 8 N -0.58 -9.27 1.99 -122.77 -0.24 -9.52 16 9 C 0.09 0.99 10.14 59.84 0.61 1.60 16 10 C 0.54 10.98 7.33 -10.98 -0.08 10.90 16 11 O -0.50 -12.28 15.83 5.56 0.09 -12.20 16 12 C -0.15 -3.03 4.78 36.01 0.17 -2.86 16 13 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 14 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 15 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 18 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 24 H 0.07 0.97 7.13 -51.93 -0.37 0.60 16 25 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 26 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 27 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 30 H 0.08 0.84 6.66 -51.93 -0.35 0.50 16 31 H 0.09 1.80 8.11 -51.92 -0.42 1.38 16 32 H 0.09 1.70 7.41 -51.92 -0.38 1.32 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -36.44 304.38 -7.40 -43.84 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.02 Total: -2.22 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.18 Total: -3.62 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.36 Total: -42.88 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.44 -7.40 -43.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347096490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.601 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds