Wall clock time and date at job start Mon Mar 30 2020 00:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38401 * 120.44577 * 2 1 4 4 C 1.38799 * 118.49413 * 180.02562 * 3 2 1 5 5 C 1.38111 * 119.30901 * 0.02562 * 4 3 2 6 6 N 1.31902 * 120.84742 * 359.71628 * 5 4 3 7 7 C 1.32378 * 121.63668 * 0.57244 * 6 5 4 8 8 N 1.39413 * 119.69777 * 179.71202 * 7 6 5 9 9 C 1.46494 * 120.00393 * 95.00456 * 8 7 6 10 10 C 1.34775 * 119.99560 * 275.00507 * 8 7 6 11 11 O 1.21279 * 120.00095 * 0.02562 * 10 8 7 12 12 C 1.50703 * 119.99922 * 179.97438 * 10 8 7 13 13 S 1.81001 * 109.46935 * 180.02562 * 12 10 8 14 14 C 1.76207 * 99.99763 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00016 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47324 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47059 * 120.00600 * 18 16 14 21 21 H 1.48508 * 109.47327 * 240.00377 * 18 16 14 22 22 H 1.08991 * 109.47594 * 272.02338 * 1 2 3 23 23 H 1.09000 * 109.47276 * 32.03081 * 1 2 3 24 24 H 1.09004 * 109.46861 * 152.02221 * 1 2 3 25 25 H 1.08006 * 120.75268 * 0.04448 * 3 2 1 26 26 H 1.08007 * 120.34323 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.57425 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47569 * 264.81288 * 9 8 7 29 29 H 1.09004 * 109.47171 * 24.81291 * 9 8 7 30 30 H 1.08998 * 109.47319 * 144.80989 * 9 8 7 31 31 H 1.09000 * 109.46999 * 300.00103 * 12 10 8 32 32 H 1.09001 * 109.46707 * 59.99816 * 12 10 8 33 33 H 0.97009 * 119.99524 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1932 0.0000 4 6 3.5955 1.1459 -0.0005 5 6 4.2301 -0.0807 -0.0016 6 7 3.5352 -1.2018 0.0035 7 6 2.2114 -1.1982 -0.0015 8 7 1.5174 -2.4073 -0.0018 9 6 1.0521 -2.9852 1.2613 10 6 1.2747 -3.0445 -1.1643 11 8 1.6604 -2.5663 -2.2100 12 6 0.5250 -4.3518 -1.1648 13 16 0.3607 -4.9525 -2.8643 14 6 -0.5276 -6.4467 -2.5761 15 1 -0.7972 -6.7291 -1.5691 16 6 -0.8819 -7.2603 -3.6434 17 7 -0.5538 -6.9159 -4.8707 18 14 -1.8230 -8.8447 -3.3378 19 1 -2.0676 -9.0022 -1.8816 20 1 -3.1224 -8.7948 -4.0550 21 1 -1.0277 -9.9965 -3.8340 22 1 -0.3634 0.0363 1.0269 23 1 -0.3634 0.8712 -0.5450 24 1 -0.3633 -0.9076 -0.4821 25 1 1.6879 2.1396 0.0007 26 1 4.1725 2.0589 -0.0010 27 1 5.3094 -0.1225 -0.0025 28 1 1.7842 -3.7079 1.6219 29 1 0.9293 -2.1931 1.9999 30 1 0.0965 -3.4848 1.1021 31 1 1.0724 -5.0847 -0.5721 32 1 -0.4653 -4.2029 -0.7343 33 1 -0.8017 -7.4844 -5.6166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347096490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:29 Heat of formation + Delta-G solvation = -14.323717 kcal Electronic energy + Delta-G solvation = -17418.638445 eV Core-core repulsion = 14570.118987 eV Total energy + Delta-G solvation = -2848.519459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95548 -40.14530 -36.77464 -34.59202 -34.57752 -32.63892 -30.58147 -28.49302 -27.71952 -27.45348 -24.58621 -23.16794 -21.21810 -19.70564 -18.63628 -18.00354 -17.73315 -16.88749 -16.64548 -16.34123 -16.03052 -15.29952 -15.12579 -14.55595 -14.48246 -14.30161 -13.98310 -13.70402 -13.60453 -13.44848 -13.36236 -13.16224 -12.91336 -12.65672 -12.56585 -11.73391 -11.19135 -11.16052 -10.78815 -10.72006 -10.29318 -9.95992 -9.78839 -8.69881 -8.35060 -6.14314 -0.00532 0.29240 1.19369 1.40085 1.42326 1.45194 1.56969 1.91527 2.26219 2.70429 2.99564 3.21824 3.55058 3.74947 3.86313 4.01131 4.03738 4.08989 4.18948 4.36502 4.41693 4.53138 4.56553 4.71052 4.73493 4.79235 5.11609 5.16396 5.21450 5.39332 5.42034 5.84706 6.05133 6.20065 6.90645 7.06146 7.08036 8.74664 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041680 B = 0.004206 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.629602 B = 6655.797081 C = 6779.855367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.072 4.072 4 C -0.156 4.156 5 C 0.087 3.913 6 N -0.523 5.523 7 C 0.315 3.685 8 N -0.564 5.564 9 C 0.078 3.922 10 C 0.541 3.459 11 O -0.556 6.556 12 C -0.119 4.119 13 S -0.153 6.153 14 C -0.544 4.544 15 H 0.086 0.914 16 C 0.013 3.987 17 N -0.913 5.913 18 Si 1.001 2.999 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.275 1.275 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.044 0.956 25 H 0.175 0.825 26 H 0.179 0.821 27 H 0.180 0.820 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 15.831 16.982 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.098 4.098 4 C -0.175 4.175 5 C -0.070 4.070 6 N -0.234 5.234 7 C 0.091 3.909 8 N -0.297 5.297 9 C -0.063 4.063 10 C 0.329 3.671 11 O -0.433 6.433 12 C -0.270 4.270 13 S 0.074 5.926 14 C -0.691 4.691 15 H 0.104 0.896 16 C -0.191 4.191 17 N -0.549 5.549 18 Si 0.823 3.177 19 H -0.178 1.178 20 H -0.198 1.198 21 H -0.201 1.201 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.063 0.937 25 H 0.192 0.808 26 H 0.196 0.804 27 H 0.197 0.803 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.834 15.665 15.295 22.227 hybrid contribution -0.998 -0.952 0.786 1.588 sum 2.836 14.713 16.082 21.980 Atomic orbital electron populations 1.20724 0.88695 1.03009 1.03860 1.21197 0.98981 0.92847 1.00613 1.21898 0.94530 0.98167 0.95172 1.22607 0.95416 1.00230 0.99229 1.23105 1.01242 0.87071 0.95629 1.67210 1.08754 1.34639 1.12847 1.18246 0.87578 0.85876 0.99222 1.45156 1.55063 1.21377 1.08093 1.22155 1.01070 1.00047 0.83054 1.20347 0.78603 0.85294 0.82810 1.90687 1.52313 1.67386 1.32895 1.23349 1.03812 0.96192 1.03623 1.85670 1.74626 1.27428 1.04835 1.23230 1.41446 1.07642 0.96832 0.89622 1.26150 0.96657 1.02395 0.93918 1.70201 1.45566 1.39429 0.99715 0.84874 0.77465 0.76210 0.79195 1.17808 1.19841 1.20063 0.88268 0.89501 0.93701 0.80810 0.80383 0.80335 0.91493 0.88506 0.88674 0.87288 0.86313 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.81 71.24 0.70 -1.43 16 2 C -0.13 -3.22 5.91 -19.64 -0.12 -3.34 16 3 C -0.07 -1.26 9.86 22.44 0.22 -1.04 16 4 C -0.16 -2.55 10.11 22.37 0.23 -2.33 16 5 C 0.09 2.00 11.18 84.65 0.95 2.94 16 6 N -0.52 -16.86 10.39 -193.04 -2.01 -18.86 16 7 C 0.32 9.88 5.40 132.90 0.72 10.60 16 8 N -0.56 -18.06 1.99 -660.73 -1.32 -19.37 16 9 C 0.08 1.66 10.14 127.77 1.30 2.95 16 10 C 0.54 22.50 7.33 87.66 0.64 23.15 16 11 O -0.56 -28.68 15.83 -3.03 -0.05 -28.72 16 12 C -0.12 -4.95 4.78 71.24 0.34 -4.61 16 13 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 14 C -0.54 -31.25 9.50 67.95 0.65 -30.60 16 15 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 16 C 0.01 0.77 5.49 84.86 0.47 1.23 16 17 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 18 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 19 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 24 H 0.04 1.16 7.13 -2.38 -0.02 1.15 16 25 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 26 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 27 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.55 8.01 -2.38 -0.02 1.53 16 30 H 0.09 1.76 6.66 -2.39 -0.02 1.75 16 31 H 0.11 4.17 8.11 -2.40 -0.02 4.15 16 32 H 0.12 4.28 7.41 -2.39 -0.02 4.26 16 33 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -84.03 304.38 4.97 -79.05 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.11 Total: 10.85 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.08 Total: -2.47 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.04 Total: -94.55 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -84.03 4.97 -79.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347096490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.729 kcal (2) G-P(sol) polarization free energy of solvation -84.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds