Wall clock time and date at job start Mon Mar 30 2020 00:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 4 18 18 C 1.33638 * 126.03862 * 90.00255 * 17 16 14 19 19 N 1.31778 * 114.49943 * 180.02562 * 18 17 16 20 20 C 1.29029 * 117.12706 * 359.97438 * 19 18 17 21 21 S 1.70979 * 110.16392 * 359.73125 * 20 19 18 22 22 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 23 23 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 24 24 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 26 26 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 27 27 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 28 28 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 29 29 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 31 31 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 32 32 H 1.07999 * 122.75004 * 359.97438 * 18 17 16 33 33 H 1.07999 * 124.91922 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 3.5004 6.3308 2.4025 12 1 1.6020 6.6412 3.8794 13 1 3.7964 6.1838 4.8046 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1352 -0.1226 -0.2520 18 6 6.5576 -1.3432 0.0911 19 7 7.8677 -1.4844 0.1043 20 6 8.5740 -0.4510 -0.2091 21 16 7.5537 0.8707 -0.5772 22 1 -0.5399 0.9353 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 1.4888 1.6967 2.5459 28 1 3.0990 1.3603 3.2260 29 1 1.7319 3.9742 5.4300 30 1 4.0730 -0.5248 -0.6265 31 1 4.6113 1.1022 -1.1075 32 1 5.8807 -2.1477 0.3382 33 1 9.6533 -0.4258 -0.2387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359406505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:22 Heat of formation + Delta-G solvation = 32.805868 kcal Electronic energy + Delta-G solvation = -17573.440068 eV Core-core repulsion = 14726.964301 eV Total energy + Delta-G solvation = -2846.475766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71999 -38.85291 -35.72789 -33.34076 -32.52230 -32.03833 -28.39263 -26.99999 -25.49250 -24.48314 -22.58574 -20.23410 -19.83296 -18.66874 -17.79520 -16.58445 -16.38265 -15.91150 -15.22044 -14.70695 -14.39289 -14.27802 -13.98097 -13.80738 -13.16719 -12.74807 -12.57622 -12.45115 -11.94381 -11.71716 -11.31451 -11.16580 -10.98959 -10.89826 -10.63628 -10.21311 -9.65991 -9.57147 -9.30841 -9.23342 -8.98790 -8.69087 -8.45766 -7.74335 -6.06569 -4.11433 0.82221 1.48543 1.87095 2.40043 2.95780 3.27931 3.31398 3.36346 3.40401 3.97651 4.41956 4.43739 4.84921 5.02739 5.12988 5.25612 5.29297 5.32536 5.34724 5.52551 5.61748 5.85420 5.97050 6.14050 6.24948 6.74544 6.86189 7.04123 7.41775 7.50033 7.79141 7.89659 8.20486 8.33627 8.86424 9.02349 9.53731 11.01651 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.006095 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.502732 B = 4593.064152 C = 5759.674981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.592 5.592 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.529 6.529 16 C -0.069 4.069 17 C -0.183 4.183 18 C 0.034 3.966 19 N -0.470 5.470 20 C 0.005 3.995 21 S 0.133 5.867 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.172 0.828 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -6.710 -14.173 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.405 6.405 16 C -0.111 4.111 17 C -0.304 4.304 18 C -0.116 4.116 19 N -0.184 5.184 20 C -0.292 4.292 21 S 0.385 5.615 22 H 0.117 0.883 23 H 0.113 0.887 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.189 0.811 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.771 -6.127 -13.628 15.685 hybrid contribution -0.477 0.318 0.449 0.728 sum 4.294 -5.809 -13.179 15.029 Atomic orbital electron populations 1.23829 0.95858 1.01813 1.00329 1.23420 0.96438 0.98965 1.00128 1.20616 0.93209 0.95483 0.89645 1.48220 1.10271 1.60144 1.13713 1.19293 0.95422 0.93793 0.78648 1.21457 1.40518 0.93281 1.01255 0.92416 1.24937 0.95049 0.98773 0.95329 1.69942 1.42088 1.36093 1.05162 0.86457 0.77931 0.84963 0.78163 1.19782 1.20937 1.20866 1.20100 0.82595 0.79046 0.89167 1.90709 1.52475 1.55704 1.41644 1.20214 0.89867 1.02724 0.98332 1.25392 0.99089 0.96759 1.09188 1.21613 0.90735 0.96994 1.02303 1.66272 1.05909 1.30291 1.15910 1.28244 1.04715 0.91610 1.04631 1.83973 0.97877 1.17310 1.62308 0.88253 0.88749 0.87758 0.89303 0.90778 0.94888 0.93883 0.92749 0.87362 0.88088 0.81089 0.78759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.25 9.76 -36.03 -0.35 -2.60 16 3 C 0.13 2.04 5.66 -5.19 -0.03 2.01 16 4 N -0.59 -12.04 2.44 -176.43 -0.43 -12.47 16 5 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 6 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.51 10.12 7.66 -10.98 -0.08 10.04 16 15 O -0.53 -13.18 15.61 5.55 0.09 -13.09 16 16 C -0.07 -0.97 4.79 -29.03 -0.14 -1.11 16 17 C -0.18 -2.71 5.09 -35.92 -0.18 -2.89 16 18 C 0.03 0.51 11.25 -19.19 -0.22 0.30 16 19 N -0.47 -7.12 10.54 -15.75 -0.17 -7.28 16 20 C 0.01 0.07 12.23 51.59 0.63 0.70 16 21 S 0.13 1.76 23.22 -107.50 -2.50 -0.73 16 22 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 23 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 24 H 0.10 1.27 7.85 -52.49 -0.41 0.86 16 25 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 26 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.11 1.20 7.82 -51.93 -0.41 0.80 16 31 H 0.10 1.21 7.40 -51.93 -0.38 0.83 16 32 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -34.18 307.58 -7.03 -41.21 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.97 Total: -0.79 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.40 Total: -2.41 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.14 Total: -45.55 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.50 Total: -0.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.18 -7.03 -41.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359406505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds